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| Status |
Public on Jun 22, 2016 |
| Title |
Transcriptome analysis of wild type and erythromycin-producing strain of S. erythraea |
| Organism |
Saccharopolyspora erythraea |
| Experiment type |
Expression profiling by array
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| Summary |
Erythromycin is a medically important antibiotic, biosynthesized by the actinomycete Saccharopolyspora erythraea. We used transcriptomic approach to compare whole genome expression in erythromycin high-producing strain, compared to the wild type S. erythraea strain in four stages of fermentation.
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| Overall design |
2 strains (3 individual fermentations each), 4 time points --> 24 samples (2 exluded from anaysis, 22 remaining); one color design
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| Contributor(s) |
Petek M, Baebler S |
| Citation(s) |
27255285 |
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| Submission date |
Jan 15, 2015 |
| Last update date |
Jun 23, 2016 |
| Contact name |
Spela Baebler |
| E-mail(s) |
[email protected]
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| Organization name |
National Institute of Biology
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| Department |
Department of Biotechnology and Systems Biology
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| Street address |
Vecna pot 111
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| City |
Ljubljana |
| ZIP/Postal code |
1000 |
| Country |
Slovenia |
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| Platforms (1) |
| GPL19656 |
Agilent-042341 Saccharopolyspora erythraea SACE_v1 |
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| Samples (22)
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| GSM1585685 |
high-producer strain, time point 1, replicate 1 |
| GSM1585686 |
high-producer strain, time point 1, replicate 2 |
| GSM1585687 |
high-producer strain, time point 1, replicate 3 |
| GSM1585688 |
wild-type strain, time point 1, replicate 1 |
| GSM1585689 |
wild-type strain, time point 1, replicate 2 |
| GSM1585690 |
high-producer strain, time point 2, replicate 1 |
| GSM1585691 |
high-producer strain, time point 2, replicate 2 |
| GSM1585692 |
high-producer strain, time point 2, replicate 3 |
| GSM1585693 |
wild-type strain, time point 2, replicate 1 |
| GSM1585694 |
wild-type strain, time point 2, replicate 2 |
| GSM1585695 |
wild-type strain, time point 2, replicate 3 |
| GSM1585696 |
high-producer strain, time point 3, replicate 1 |
| GSM1585697 |
high-producer strain, time point 3, replicate 2 |
| GSM1585698 |
high-producer strain, time point 3, replicate 3 |
| GSM1585699 |
wild-type strain, time point 3, replicate 2 |
| GSM1585700 |
wild-type strain, time point 3, replicate 3 |
| GSM1585701 |
high-producer strain, time point 4, replicate 1 |
| GSM1585702 |
high-producer strain, time point 4, replicate 2 |
| GSM1585703 |
high-producer strain, time point 4, replicate 3 |
| GSM1585704 |
wild-type strain, time point 4, replicate 1 |
| GSM1585705 |
wild-type strain, time point 4, replicate 2 |
| GSM1585706 |
wild-type strain, time point 4, replicate 3 |
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| Relations |
| BioProject |
PRJNA272711 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE65007_RAW.tar |
44.2 Mb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
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