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Series GSE65272 Query DataSets for GSE65272
Status Public on Jan 26, 2015
Title Bacillus subtilis WalR (YycF) ChIP-chip Bacillus subtilis; Bacillus subtilis subsp. subtilis str. 168
Platform organism Bacillus subtilis subsp. subtilis str. 168
Sample organisms Bacillus subtilis; Bacillus subtilis subsp. subtilis str. 168
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary Identification of the specific WalR (YycF) binding regions on the B. subtilis chromosome during exponential and phosphate starvation growth phases. The data serves to extend the WalRK regulon in Bacillus subtilis and its role in cell wall metabolism, as well as implying a role in several other cellular processes.
 
Overall design For each sample analyzed in this study three biological replicates were performed. Three different samples were taken from a strain expressing the WalR-SPA protein as well as from wild-type (168) without a tagged WalR. Samples were taken from exponentially growing cells in low phosphate medium (LPDM) as well as from phosphate-limited cells (T2). Each sample compares ChIP DNA vs. Total DNA from the same cells.
 
Contributor(s) Salzberg LI, Hokamp K, Devine KM
Citation(s) 23199363
Submission date Jan 26, 2015
Last update date Jan 26, 2015
Contact name Karsten Hokamp
E-mail(s) [email protected]
Phone +35318962719
Organization name Trinity College Dublin
Department Smurfit Institute of Genetics
Street address College Green
City Dublin
ZIP/Postal code 2
Country Ireland
 
Platforms (1)
GPL13168 BaSysBio Bacillus subtilis T2 385K array [090325_CBS_DTU_Bsub_T2]
Samples (12)
GSM1591524 Bsub_LSB003_LPDM_exp_rep1
GSM1591525 Bsub_LSB003_LPDM_exp_rep2
GSM1591526 Bsub_LSB003_LPDM_exp_rep3
Relations
BioProject PRJNA273595

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE65272_F-W_merged_smoothed.txt.gz 8.9 Mb (ftp)(http) TXT
GSE65272_RAW.tar 236.6 Mb (http)(custom) TAR (of PAIR)
Processed data are available on Series record

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