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GEO accession:
Series GSE67151
Query DataSets for GSE67151
Status
Public on Aug 20, 2015
Title
Rpd3 drives transcriptional quiescence
Organism
Saccharomyces cerevisiae
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
26300265
Submission date
Mar 23, 2015
Last update date
May 15, 2019
Contact name
Jeffrey N McKnight
E-mail(s)
[email protected]
Organization name
University of Oregon
Department
Institute of Molecular Biology
Lab
McKnight Lab
Street address
1229 University of Oregon, 1318 Franklin Blvd, Rm 273 Onyx Bridge
City
Eugene
State/province
OR
ZIP/Postal code
97408
Country
USA
Platforms (1)
GPL9134
Illumina Genome Analyzer (Saccharomyces cerevisiae)
Samples (63)
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GSM1640253
MNase-Seq log 50%
GSM1640254
MNase-Seq log 80%
GSM1640255
MNase-Seq Q 50%
GSM1640256
MNase-Seq Q 80%
GSM1640257
RNA-Seq of wild type log cells-1a
GSM1640258
RNA-Seq of wild type log cells-2a
GSM1640259
RNA-Seq of wild type log cells-1b
GSM1640260
RNA-Seq of wild type log cells-2b
GSM1640261
RNA-Seq of wild type Q cells-1
GSM1640262
RNA-Seq of wild type Q cells-2
GSM1640263
RNA-Seq of wild type DS cells-1
GSM1640264
RNA-Seq of wild type DS cells-2
GSM1640265
RNA-Seq of rpd3 log cells-1
GSM1640266
RNA-Seq of rpd3 log cells-2
GSM1640267
RNA-Seq of rpd3 DS cells-1
GSM1640268
RNA-Seq of rpd3 DS cells-2
GSM1640269
RNA-Seq of rpd3 Q cells-1
GSM1640270
RNA-Seq of rpd3 Q cells-2
GSM1640271
H3 ChIP-Seq WT log 1
GSM1640272
H4ac (Penta) ChIP-Seq WT log 1
GSM1640273
Input DNA WT log 1
GSM1640274
H3 ChIP-Seq WT Q 1
GSM1640275
H4ac (Penta) ChIP-Seq WT Q 1
GSM1640276
Input DNA WT Q 1
GSM1640277
H3 ChIP-Seq WT DS 2
GSM1640278
H4ac (Penta) ChIP-Seq WT DS 2
GSM1640279
Input DNA WT DS 2
GSM1640280
H3 ChIP-Seq WT log 2
GSM1640281
H4ac (Penta) ChIP-Seq WT log 2
GSM1640282
Input DNA WT log 2
GSM1640283
H3 ChIP-Seq WT Q 2
GSM1640284
H4ac (Penta) ChIP-Seq WT Q 2
GSM1640285
Input DNA WT Q 2
GSM1640286
H3 ChIP-Seq Drpd3 log 1
GSM1640287
H4ac (Penta) ChIP-Seq Drpd3 log 1
GSM1640288
Input DNA Drpd3 log 1
GSM1640289
H3 ChIP-Seq Drpd3 Q 1
GSM1640290
H4ac (Penta) ChIP-Seq Drpd3 Q 1
GSM1640291
Input DNA Drpd3 Q 1
GSM1640292
H3 ChIP-Seq Drpd3 log 2
GSM1640293
H4ac (Penta) ChIP-Seq Drpd3 log 2
GSM1640294
Input DNA Drpd3 log 2
GSM1640295
H3 ChIP-Seq Drpd3 Q 2
GSM1640296
H4ac (Penta) ChIP-Seq Drpd3 Q 2
GSM1640297
Input DNA Drpd3 Q 2
GSM1640298
Input DNA Rpd3-Myc log 1
GSM1640299
Rpd3-Myc ChIP-Seq Rpd3-Myc log 1
GSM1640300
Input DNA Rpd3-Myc Q 1
GSM1640301
Rpd3-Myc ChIP-Seq Rpd3-Myc Q 1
GSM1640302
Input DNA Rpd3-Myc rap 1
GSM1640303
Rpd3-Myc ChIP-Seq Rpd3-Myc rap 1
GSM1640304
Input DNA Rpd3-Myc thio 1
GSM1640305
Rpd3-Myc ChIP-Seq Rpd3-Myc thio 1
GSM1640306
Input DNA Rpd3-Myc DS 2
GSM1640307
Rpd3-Myc ChIP-Seq Rpd3-Myc DS 2
GSM1640308
Input DNA Rpd3-Myc log 2
GSM1640309
Rpd3-Myc ChIP-Seq Rpd3-Myc log 2
GSM1640310
Input DNA Rpd3-Myc Q 2
GSM1640311
Rpd3-Myc ChIP-Seq Rpd3-Myc Q 2
GSM1640312
Input DNA Rpd3-Myc rap 2
GSM1640313
Rpd3-Myc ChIP-Seq Rpd3-Myc rap 2
GSM1640314
Input DNA Rpd3-Myc thio 2
GSM1640315
Rpd3-Myc ChIP-Seq Rpd3-Myc thio 2
This SuperSeries is composed of the following SubSeries:
GSE67148
Genome-wide maps of nucleosome positions in purified quiescent S. cerevisiae cells [MNase-Seq]
GSE67149
Strand-Specific RNA Sequencing for wild type and Drpd3 yeast entering quiescence [RNA-seq]
GSE67150
Characterization of H3 density, H3 or H4 acetylation, Rpd3 binding, TFIIB binding, and Rpb3 (pol II) binding in wild type and rpd3 cells as they transition from logarithmic growth to diauxic shift to quiescence [ChIP-Seq]
Relations
BioProject
PRJNA279126
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE67151_RAW.tar
1.9 Gb
(http)
(custom)
TAR (of SGR, TXT)
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