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| Status |
Public on Jul 01, 2016 |
| Title |
A transcriptome map of Actinobacillus pleuropneumoniae at single-nucleotide resolution using RNA-seq |
| Organism |
Actinobacillus pleuropneumoniae serovar 3 str. JL03 |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We used the RNA-seq technology to do a genome-wide transcriptional analysis of A. pleuropneumoniae strain JL03 and investigated the transcriptome structure at a single-nucleotide resolution.The RNA-Seq based transcriptome map validated annotated genes and corrected annotations of open reading frames in the genome, and led to the identification of many functional elements (e.g. regions encoding novel proteins, non-coding sRNAs and operon structures).
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| Overall design |
Transcript profiling of a single sample by RNA-Seq
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| Contributor(s) |
Su Z, Li L, Xu Z, Zhou R |
| Citation(s) |
27018591 |
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| Submission date |
Jun 23, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Lu Li |
| E-mail(s) |
[email protected], [email protected], [email protected], [email protected]
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| Organization name |
Huazhong Agricultural University
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| Street address |
Shizishan Street 1
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| City |
Wuhan |
| State/province |
Hubei |
| ZIP/Postal code |
430070 |
| Country |
China |
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| Platforms (1) |
| GPL20603 |
Illumina HiSeq 2000 (Actinobacillus pleuropneumoniae serovar 3 str. JL03) |
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| Samples (1) |
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| Relations |
| BioProject |
PRJNA287749 |
| SRA |
SRP059776 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE70153_RAW.tar |
6.6 Mb |
(http)(custom) |
TAR (of BED) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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