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GEO accession:
Series GSE73407
Query DataSets for GSE73407
Status
Public on Jun 15, 2016
Title
Set1 H3K4 methyltransferase and Jhd2 H3K4 demethylase
Organisms
Saccharomyces cerevisiae
;
Nakaseomyces glabratus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
27325136
Submission date
Sep 24, 2015
Last update date
May 15, 2019
Contact name
Timothy J Parnell
E-mail(s)
[email protected]
Organization name
Huntsman Cancer Institute
Street address
2000 Circle of Hope
City
Salt Lake City
State/province
UT
ZIP/Postal code
84112
Country
USA
Platforms (3)
GPL13821
Illumina HiSeq 2000 (Saccharomyces cerevisiae)
GPL17342
Illumina HiSeq 2500 (Saccharomyces cerevisiae)
GPL21803
Illumina HiSeq 2500 (Candida glabrata; Saccharomyces cerevisiae)
Samples (66)
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More...
GSM1892887
wild type nucleosome rep1
GSM1892888
wild type nucleosome rep2
GSM1892889
wild type nucleosome rep3
GSM1892890
set1D nucleosome rep1
GSM1892891
set1D nucleosome rep2
GSM1892892
set1D nucleosome rep3
GSM1892893
jhd2D nucleosome rep1
GSM1892894
jhd2D nucleosome rep2
GSM1892895
jhd2D nucleosome rep3
GSM1892898
WT_1
GSM1892899
jhd2_1
GSM1892900
set1_1
GSM1892901
Set1Flag_1
GSM1892902
Set1G990E_1
GSM1892903
WT_2
GSM1892904
jhd2_2
GSM1892905
set1_2
GSM1892906
Set1Flag_2
GSM1892907
Set1G990E_2
GSM1892908
WT_3
GSM1892909
jhd2_3
GSM1892910
set1_3
GSM1892911
Set1Flag_3
GSM1892912
Set1G990E_3
GSM2140738
wild type H3K4me1 repeat1
GSM2140739
jhd2Δ H3K4me1 repeat1
GSM2140740
Set1G990E H3K4me1 repeat1
GSM2140741
wild type H3K4me2 repeat1
GSM2140742
jhd2Δ H3K4me2 repeat1
GSM2140743
Set1G990E H3K4me2 repeat1
GSM2140744
wild type H3K4me3 repeat1
GSM2140745
jhd2Δ H3K4me3 repeat1
GSM2140746
Set1G990E H3K4me3 repeat1
GSM2140747
wild type input repeat1
GSM2140748
jhd2Δ input repeat1
GSM2140749
Set1G990E input repeat1
GSM2140750
wild type H3K4me1 repeat2
GSM2140751
jhd2Δ H3K4me1 repeat2
GSM2140752
Set1G990E H3K4me1 repeat2
GSM2140753
wild type H3K4me2 repeat2
GSM2140754
jhd2Δ H3K4me2 repeat2
GSM2140755
Set1G990E H3K4me2 repeat2
GSM2140756
wild type H3K4me3 repeat2
GSM2140757
jhd2Δ H3K4me3 repeat2
GSM2140758
Set1G990E H3K4me3 repeat2
GSM2140759
wild type input repeat2
GSM2140760
jhd2Δ input repeat2
GSM2140761
Set1G990E input repeat2
GSM2140762
wild type H3-V5 ChIP repeat1
GSM2140763
set1D H3-V5 ChIP repeat1
GSM2140764
jhd2D H3-V5 ChIP repeat1
GSM2140765
wild type H3-2Flag ChIP repeat1
GSM2140766
set1D H3-2Flag ChIP repeat1
GSM2140767
jhd2D H3-2Flag ChIP repeat1
GSM2140768
wild type H3-V5 ChIP repeat2
GSM2140769
set1D H3-V5 ChIP repeat2
GSM2140770
jhd2D H3-V5 ChIP repeat2
GSM2140771
wild type H3-2Flag ChIP repeat2
GSM2140772
set1D H3-2Flag ChIP repeat2
GSM2140773
jhd2D H3-2Flag ChIP repeat2
GSM2140774
No tag input
GSM2140775
8V5-Set1 input
GSM2140776
Jhd2-12V5 input
GSM2140777
No tag anti-V5 ChIP
GSM2140778
8V5-Set1 anti-V5 ChIP
GSM2140779
Jhd2-12V5 anti-V5 ChIP
This SuperSeries is composed of the following SubSeries:
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More...
GSE73404
Regulation of chromatin structure by Set1 H3K4 methyltransferase and Jhd2 H3K4 demethylase
GSE73406
Transcriptional regulation by Set1 H3K4 methyltransferase and Jhd2 H3K4 demethylase
GSE81020
Regulation of chromatin structure by Set1 H3K4 methyltransferase and Jhd2 H3K4 demethylase [H3K4me ChIP-seq]
GSE81021
Regulation of chromatin structure by Set1 H3K4 methyltransferase and Jhd2 H3K4 demethylase [histone turnover]
GSE81022
Regulation of chromatin structure by Set1 H3K4 methyltransferase and Jhd2 H3K4 demethylase [ChIP-seq]
Relations
BioProject
PRJNA296896
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Format
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Supplementary file
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File type/resource
GSE73407_RAW.tar
1.1 Gb
(http)
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TAR (of BW)
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