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| Status |
Public on Jun 15, 2016 |
| Title |
Expression profiling of fission yeast strains: wild-type, erh1∆, and ccr4∆ |
| Organism |
Schizosaccharomyces pombe |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We report gene expression profiling in the fission yeast Schizosaccharomyces pombe. We performed high-throughput sequencing of RNA isolated from wild-type, erh1∆, and ccr4∆ strains. We find that many meiotic gene containing degradation sequence DSR are expressed in vegetative erh1∆, while these meiotic mRNAs do not increase in ccr4∆, indicating that Erh1 and Ccr4 target different set of genes during vegetative growth.
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| Overall design |
RNA sequencing in wild-type, erh1∆ and ccr4∆ strains. Two biological replicates for erh1∆ and ccr4∆, and one sample for wild-type because we already reported wild-type data previously.
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| Contributor(s) |
Sugiyama T, Chalamcharla VR, Thillainadesan G, Balachandran V, Dhakshnamoorthy J, Grewal SI |
| Citation(s) |
26942678 |
| |
| Submission date |
Dec 17, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Shiv Grewal |
| Phone |
2407607553
|
| Organization name |
NCI
|
| Department |
LBMB
|
| Lab |
Shiv Grewal
|
| Street address |
NCI bldg 37 Rm 6068 9000 Rockville Pike
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL16192 |
Illumina MiSeq (Schizosaccharomyces pombe) |
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| Samples (5)
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| This SubSeries is part of SuperSeries: |
| GSE76114 |
Expression profiling and ChIP-chip of Schizosaccharomyces pombe strains wildtype, erh1∆, and ccr4∆ |
|
| Relations |
| BioProject |
PRJNA306255 |
| SRA |
SRP067508 |
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