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Series GSE76555 Query DataSets for GSE76555
Status Public on Aug 08, 2016
Title Transcriptomic responses of copepodid sea lice (Lepeophtheirus salmonis) exposed to cypermethrin (Betamax®)
Organism Lepeophtheirus salmonis
Experiment type Expression profiling by array
Summary This study investigates transcriptomic responses of Atlantic salmon lice, Lepeophtheirus salmonis exposed to cypermethrin, a commonly used antiparasitic agent used in aquaculture. Copepodid L. salmonis were exposed to cypermethrin (Betamax®) at a concentration of 1.0ppb
 
Overall design An in vitro bioassay experiment was conducted using cypermethrin exposures on copepodid (larvae) sea lice (F1 generation) collected from BMA-2a New Brunswick, Canada in 2014. The bioassay exposed copepodids to 1.0 μg/L cypermethrin or a sea water control for 24 hours in glass beakers (VWR) at 12 ± 1oC. Each condition had a total volume of 500mL with six replicates and approximately 500 lice per beaker. After 24 hours, pools of ~500 copepodids were flash frozen for RNA extractions. Post 24-hours, lice were assessed for survival similarly to the technique used for staging and enumeratio first
 
Contributor(s) Poley JD, Braden LM, Whyte SK, Messmer A, Koop BF, Fast MD
Citation(s) 27612154
Submission date Jan 05, 2016
Last update date Nov 07, 2016
Contact name Ben F Koop
E-mail(s) [email protected]
Phone (250) 472-4067
Organization name The University of Victoria
Department Biology
Lab Centre for Biomedical Research
Street address PO Box 3020 STN CSC
City Victoria
State/province BC
ZIP/Postal code V8W 3N5
Country Canada
 
Platforms (1)
GPL15566 GiLS Lepeophtheirus salmonis
Samples (12)
GSM2027850 Control_copepodid_rep1
GSM2027851 Control_copepodid_rep2
GSM2027852 Control_copepodid_rep3
Relations
BioProject PRJNA307840

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE76555_RAW.tar 110.5 Mb (http)(custom) TAR (of TXT)
GSE76555_lowess_norm_data_matrix.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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