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| Status |
Public on May 20, 2016 |
| Title |
AR and ERG ChIP-seq in presence or absence of PRMT5 |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Replicates of ChIP seq data using AR and ERG antibodies from VCaP cell lines harboring inducible shRNA constructs for PRMT5 (3 independent, sh1, sh2, sh3) and 1 non targeting control (NTC), all sample stimulated with ligand, either DHT or R1881
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| Overall design |
AR ChIPseq in VCaP cells, 3 replicates each of DHT stimulated cells with one of 4 inducible shRNA constructs, sh1, sh2, sh3 targeting PRMT5 or NTC non targeting controls. Furthermore 2 AR ChIPseq in the same system stimulated with R1881 for targeting constructs sh1, sh2 and NTC. ERG ChIPseq 2 replicates DHT stimulated, each of sh1, sh2, sh3 constructs. Cells where induced (doxycyclin) for shRNA expression on day0, hormone starved on day3 and harvested on day5.
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| Contributor(s) |
Westerling T, Mounir Z, Pagliarini R, Brown M |
| Citation(s) |
27183006 |
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| Submission date |
Mar 11, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Thomas Westerling |
| E-mail(s) |
[email protected]
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| Organization name |
Dana Farber Cancer institute
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| Department |
Medical Oncology
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| Lab |
Myles Brown
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| Street address |
450 Brookline Ave
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| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02215 |
| Country |
USA |
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| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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| Samples (26)
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| Relations |
| BioProject |
PRJNA314989 |
| SRA |
SRP071668 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE79128_MatrixData_allExamindedPeaks_NormalizedReadCount_MounirEtAl_2016.txt.gz |
2.0 Mb |
(ftp)(http) |
TXT |
| GSE79128_RAW.tar |
2.8 Mb |
(http)(custom) |
TAR (of BED) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
| Processed data provided as supplementary file |
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