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Series GSE79588 Query DataSets for GSE79588
Status Public on Apr 01, 2017
Title Genome-wide maps of TRIM25 binding sites in triple negative breast cancer cell
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report high-throughput profiling of TRIM25 binding sites in triple negative breast cancer cells.
 
Overall design ChIP-seq was performed using a TRIM25 antibody on 2 triple negative breast cancer cell lines
 
Contributor(s) Walsh LA, Chan TA
Citation(s) 28813674
Submission date Mar 24, 2016
Last update date May 22, 2019
Contact name Logan A Walsh
E-mail(s) [email protected]
Phone 6468882783
Organization name Memorial Sloan Kettering Cancer Center
Department Human Oncology and Pathogenesis Program
Lab Timothy Chan
Street address 1275 York Ave
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (8)
GSM2098764 BT549_ChIPseq_rep1
GSM2098765 BT549_ChIPseq_rep2
GSM2098766 BT549_ChIPseq_rep3
This SubSeries is part of SuperSeries:
GSE79589 TRIM25
Relations
BioProject PRJNA316330
SRA SRP072323

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE79588_B.01.rpkm.bedgraph.gz 612.4 Kb (ftp)(http) BEDGRAPH
GSE79588_M.01.rpkm.bedgraph.gz 219.4 Kb (ftp)(http) BEDGRAPH
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Processed data are available on Series record

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