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| Status |
Public on Sep 13, 2016 |
| Title |
The human olfactory transcriptome |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We report the first RNAseq study of human olfactory epithelium, aimed at obtaining a whole transcriptome overview of the sensory tissue. Our work reveals nearly 200 olfactory-enriched non-receptor transcripts, 80% of which have not yet been implicated in chemosensory function, thus providing a platform for future discovery.
Our study further allowed us to quantitate the expression levels of most (90%) of the ~400 intact human olfactory receptor (OR) genes. The expression levels of different paralogous members of the OR repertoire span a 1000-fold range, suggesting a strong imbalance among different odorant specificities. Further, we obtained convincing hints that different human beings show different cross-repertoire expression patterns. Having successfully assembled transcripts for 100 OR genes, we observed prevalent genome-encoded mutations that render some transcripts inactive despite the fact that the protein coding region is intact, an unreported mechanism for OR pseudogenization.
In sum, our transcriptome study offers important observations on genes that underlie olfactory function and provides a basis for significant future work.
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| Overall design |
total RNAseq of human olfactory epithelium
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| Contributor(s) |
Olender T, Keydar I, Pinto JM, Tatarskyy P, Alkelai A, Chien M, Restrepo D, Matsunami H, Gilad Y, Lancet D |
| Citation(s) |
27515280 |
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| Submission date |
Apr 13, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Tsviya Olender |
| E-mail(s) |
[email protected]
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| Organization name |
The Weizmann Institute
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| Department |
Molecular Genetics
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| Street address |
234 Herzl St.
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| City |
Rehovot |
| ZIP/Postal code |
7610001 |
| Country |
Israel |
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| Platforms (1) |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
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| Samples (4)
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| Relations |
| BioProject |
PRJNA318389 |
| SRA |
SRP073248 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE80249_RAW.tar |
3.3 Gb |
(http)(custom) |
TAR (of WIG) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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