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| Status |
Public on Apr 26, 2016 |
| Title |
Transcriptome of Vibrio fischeri ES114 in rich medium, seawater, and after venting from the Hawaiian bobtail squid Euprymna scolopes |
| Organism |
Aliivibrio fischeri ES114 |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We report the full transcriptome (RNA-Seq) of Vibrio fischeri ES114 in rich medium, seawater, and after venting from the Hawaiian bobtail squid Euprymna scolopes. We also report the effects of ribodepletion on low-biomass samples, down to input amount of 1ng total RNA.
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| |
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| Overall design |
We performed RNAseq experiments on V. fischeri cells in culture, cells that were incubated in artificial seawater, and cells collected during expulsion from the squid host in order to look for transcriptional signals that were directly associated with host colonization.
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| |
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| Contributor(s) |
Thompson LR, Nikolakakis K |
| Citation(s) |
28152560 |
| |
| Submission date |
Apr 25, 2016 |
| Last update date |
Jul 08, 2019 |
| Contact name |
Luke Thompson |
| E-mail(s) |
[email protected]
|
| Organization name |
UC San Diego
|
| Street address |
9500 Gilman Dr
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92093-0763 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL21766 |
Illumina HiSeq 2500 (Vibrio fischeri ES114) |
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| Samples (23)
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| Relations |
| BioProject |
PRJNA319479 |
| SRA |
SRP073788 |
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