|
| Status |
Public on Jun 14, 2007 |
| Title |
S. coelicolor YSK4425 R5- Medium Time-course Study (Culture #1) |
| Organism |
Streptomyces coelicolor |
| Experiment type |
Expression profiling by array
|
| Summary |
Antibiotic biosynthesis in Streptomyces species is controlled by a complex genetic and biochemical network of global and pathway specific regulators. Details of their precise interactions in mediating temporal and spatial expression of secondary metabolite genes remain poorly defined. In this study, we employed whole-genome microarray methods to investigate the temporal transcriptome profiles of S. coelicolor A3(2) ∆afsS::apr mutant strain and compared with the M145 Wild-type strain (series submitted separately).
Keywords: Time course
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| Overall design |
Time-course study involved analysis of 8 samples (16h, 20h, 22h, 24h, 26h, 31h, 37h and 40h). All arrays used cDNA labeled with Alexa647 and gDNA labeled with Cy3.
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| Contributor(s) |
Jayapal KP, Lian W, Hu W |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jun 13, 2007 |
| Last update date |
Mar 17, 2012 |
| Contact name |
Karthik P Jayapal |
| E-mail(s) |
[email protected]
|
| Organization name |
University of Minnesota
|
| Department |
Chemical Engineering and Materials Science
|
| Lab |
Hu lab
|
| Street address |
421 Washington Ave SE
|
| City |
Minneapolis |
| State/province |
MN |
| ZIP/Postal code |
55414 |
| Country |
USA |
| |
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| Platforms (1) |
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| Samples (8)
|
| GSM201081 |
S. coelicolor YSK4425 16h (Culture#2) |
| GSM201082 |
S. coelicolor YSK4425 20h (Culture#2) |
| GSM201083 |
S. coelicolor YSK4425 22h (Culture#2) |
| GSM201084 |
S. coelicolor YSK4425 24h (Culture#2) |
| GSM201085 |
S. coelicolor YSK4425 26h (Culture#2) |
| GSM201086 |
S. coelicolor YSK4425 31h (Culture#2) |
| GSM201087 |
S. coelicolor YSK4425 37h (Culture#2) |
| GSM201088 |
S. coelicolor YSK4425 40h (Culture#2) |
|
| Relations |
| BioProject |
PRJNA100977 |
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