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| Status |
Public on Jun 30, 2007 |
| Title |
Lithium-responsive neurological pathway (kitam-affy-droso-427260) |
| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by array
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| Summary |
Lithium has been used for more than 50 years as the primary therapy for bipolar affective disorder (BPD) and is highly effective in its treatment. However, the molecular and cellular mechanisms underlying the lithium’s therapeutic action still remains elusive. The goal of the proposed study is to identify genes involved in the lithium-responsive neurological pathway using the fruit fly as a model organism. Based on the fact that the fundamental molecular and cellular mechanisms are well conserved between the fruit fly and vertebrates, the outcomes of this project are expected to lead to the recognition of uncharacterized players or processes responsible for the lithium action in the vertebrates, which would open up the future possibility to develop novel and improved therapies for BPD.
The proposed gene-profiling experiment is designed to identify candidate genes and genetic pathways involved in the lithium-responsive biological process. Specific aims of this project are; 1) identify genes whose expression levels are significantly different between the wild type and Shu, 2) identify genes whose expression levels are enhanced or suppressed after lithium treatment, and 3) identify genes whose expression is differentially regulated in the wild type and Shu after lithium treatment. We expect that the genes identified through the proposed microarray analysis will provide important clues for elucidating the molecular and cellular processes responsible for the lithium action.
A Drosophila mutant Shudderer (Shu) exhibits various neurological phenotypes, including hyperactivity, uncoordinated movements, and sporadically occurring jerks. Interestingly, many of these phenotypes are greatly suppressed by lithium with the internal concentrations used for treatment of human BPD patients. In addition, Shu mutant is more resistant to the toxic effects of lithium than the wild type strain. These data have led us to the hypothesis that the biological process responsive to lithium is affected in the Shu mutant. We expect that we will be able to identify genes and genetic pathways involved in the lithium-responsive process by comparing the gene expression profiles between the wild type and the Shu mutant with or without lithium treatment.
Newly eclosed Canton-S (wild type) and Shu mutant females will be placed in vials containing fly food with or without 50mM LiCl. They will be cultured at 25oC with 65% humidity for 5 days. Three groups of fifty flies (150 flies in total) will be collected for each experimental condition (i.e., genotype and lithium treatment) and frozen on dry ice. The head will be separated and total RNA will be extracted from each group using the TRIzol Reagent (Life Technologies) followed by an RNeasy (Qiagen) cleanup step and a DNase I digestion step. The RNA will be resuspended in DEPC-treated water and the absorbance will be checked at 260 and 280 nm for determination of sample purity and concentration. The GeneChip Drosophila Genome 2.0 Arrays will be used to quantify the levels of transcripts in each sample. The total number of samples will be 4 (2 genotypes and 2 treatments) X 3 (triplicate) = 12.
Keywords: dose response
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| Contributor(s) |
Kitamoto T |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Jun 29, 2007 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Winnie Liang |
| E-mail(s) |
[email protected]
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| Organization name |
Translational Genomics
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| Street address |
445 N. Fifth Street
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| City |
Phoenix |
| State/province |
AZ |
| ZIP/Postal code |
85012 |
| Country |
USA |
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| Platforms (1) |
| GPL1322 |
[Drosophila_2] Affymetrix Drosophila Genome 2.0 Array |
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| Samples (12)
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| GSM206417 |
whole animal, whole head: CS 0 #3_le1 |
| GSM206418 |
whole animal, whole head: CS 0 #1_le1 |
| GSM206419 |
whole animal, whole head: CS 0 #2_le1 |
| GSM206420 |
whole animal, whole head: Shu 0 #1_le1 |
| GSM206421 |
whole animal, whole head: Shu 0 #2_le1 |
| GSM206422 |
whole animal, whole head: Shu 0 #3_le1 |
| GSM206423 |
whole animal, whole head: CS 50 #1_le1 |
| GSM206424 |
whole animal, whole head: CS 50 #2_le1 |
| GSM206425 |
whole animal, whole head: CS 50 #3_le1 |
| GSM206426 |
whole animal, whole head: Shu 50 #1_le1 |
| GSM206427 |
whole animal, whole head: Shu 50 #2_le1 |
| GSM206428 |
whole animal, whole head: Shu 50 #3_le1 |
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| Relations |
| BioProject |
PRJNA101323 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE8330_RAW.tar |
22.6 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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