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| Status |
Public on May 22, 2008 |
| Title |
Mechanism for Fe(III) Reduction in Pelobacter carbinolicus |
| Organism |
Syntrophotalea carbinolica |
| Experiment type |
Expression profiling by array
|
| Summary |
Pelobacter carbinolicus is phylogenetically intertwined with the Geobacteraceae, a family of deltaproteobacteria which couple oxidation of organic compounds to Fe(III) reduction. Whereas Geobacter species completely oxidize organic compounds to CO2, Pelobacter species either ferment or oxidize short chain alcohols to acetate. Pelobacter species also contain far fewer c-type cytochromes, proteins which play a role in electron transfer during Fe(III) respiration, compared to their Geobacter counterparts.
Keywords: two-condition comparison
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| |
|
| Overall design |
Three biological replicates were hybridized in duplicate. Experimental (FeIII) was labeled with cy5, control (acetoin) was labeled with cy3.
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| |
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| Contributor(s) |
Haveman SA, Lovley DR |
| Citation(s) |
18515480 |
| |
| Submission date |
Jun 29, 2007 |
| Last update date |
Mar 17, 2012 |
| Contact name |
Derek Lovley |
| Organization name |
University of Massachusetts Amherst
|
| Department |
Microbiology
|
| Lab |
D. R. Lovley
|
| Street address |
University of Massachusetts at Amherst, Dept. of Microbiology, Morrill IV north room 202
|
| City |
Amherst |
| State/province |
MA |
| ZIP/Postal code |
01003 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL5427 |
Pelobacter carbinolicus antisense-detecting 12K oligo array |
|
| Samples (6)
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| Relations |
| BioProject |
PRJNA101339 |
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