 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Aug 31, 2017 |
| Title |
Ebola virus glycoprotein variant with increased infectivity for human cells dominated the 2013-2016 outbreak |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The unprecedented magnitude of the 2013-2016 Makona Ebola virus (M-EBOV) epidemic likely resulted from multiple epidemiologic factors that set it apart from previous outbreaks. Nonetheless, genetic adaptations that distinguish M-EBOV from previous isolates may also have contributed to the scale of the epidemic. Of particular interest is a M-EBOV glycoprotein (GP) variant, GP-A82V, that was first detected at the inflection point of the 2013-2016 outbreak - when the number of cases increased exponentially - and which completely supplanted the earlier M-EBOV sequence. We found that, as compared with the earlier strain, GP-A82V increased the ability of M-EBOV to fuse with and infect cells of primate origin, including human blood dendritic cells, without altering innate immune signaling in target cells. Residue 82 is located at the NPC1-binding site on M-EBOV GP and the increased infectivity of GP-A82V was restricted to cells from species in which the NPC1 orthologue bears primate-defining residues at the critical interface. We utilized HIV-derived lentiviral vectors pseudotyped with founder and A82V containing M-EBOV GPs to explore the potential that this modification alters how human monocyte-derived dendritic cells (MDDCs) respond to EBOV GP stimulation.
|
| |
|
| Overall design |
We generated stocks of lentiviral vector bearing one the following three M-EBOV GPs: founder, A82V, and A82V/T230A. These viral stocks were used to challenge MDDCs from two healthy, anonymous human donors. Stimulated MDDCs were harvested at 1, 2, 4, and 6 hours after viral addition. Gene expression in M-EBOV GP challenged MDDCs was compared to a unstimulated control.
|
| |
|
| Contributor(s) |
Diehl WE, Kim K, McDonel P, Kucukural A, Garber M, Luban J |
| Citation(s) |
27814506 |
| |
| Submission date |
Jul 26, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Alper Kucukural |
| E-mail(s) |
[email protected]
|
| Phone |
7743124493
|
| Organization name |
UMass Medical School
|
| Department |
Program in Molecular Medicine
|
| Lab |
Biocore
|
| Street address |
364 Plantation Street
|
| City |
Worcester |
| State/province |
MA |
| ZIP/Postal code |
01605 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (26)
|
|
| Relations |
| BioProject |
PRJNA335391 |
| SRA |
SRP079916 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE84865_genes_expression_expected_count.tsv.gz |
1.2 Mb |
(ftp)(http) |
TSV |
| GSE84865_genes_expression_tpm.tsv.gz |
1.3 Mb |
(ftp)(http) |
TSV |
| GSE84865_isoforms_expression_expected_count.tsv.gz |
2.1 Mb |
(ftp)(http) |
TSV |
| GSE84865_isoforms_expression_tpm.tsv.gz |
2.0 Mb |
(ftp)(http) |
TSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
|
|
|
|
 |
Less...
More...