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Series GSE85436 Query DataSets for GSE85436
Status Public on Aug 11, 2016
Title Transcriptomic evaluation of bovine embryo quality on blastocysts obtained from peri-pubertal oocyte donors [8 mo vs 14 mo]
Organism Bos taurus
Experiment type Expression profiling by array
Summary Assisted reproduction technologies (ART) and high selection pressure observed in the dairy industry are leading towards the use of younger females for reproduction purpose, reducing the interval between generations. This situation might have an impact on embryo quality, which can affect the success rate of the procedures. This study aims to document the effect of donor age on embryo quality, on transcriptomic level, in order to caracterize the effect of using young animals for reproduction purpose.
 
Overall design 10 young Holstein cows were used 3 times each at different ages for ovarian stimulation protocols and oocyte collections (at 8, 11 and 14 months). These oocytes were then fertilized in vitro with adult bull semen, generating 3 lots of embryos per animal. Semen from the same bull was used for all females, at all times. Each animal was used as its own control for age-effect evaluation. EmbryoGENE plateform allowed whole genome assessment of gene expression patterns at the blastocyst stage. Embryos from animals at 8 vs 14 months and at 11 vs 14 months were used for microarray hybridization. Validation was done performing RT-qPCR tests on 7 candidate genes.
 
Contributor(s) Morin-Doré L, Blondin P, Vigneault C, Grand F, Labrecque R, Sirard M
Citation(s) 28257859
Submission date Aug 10, 2016
Last update date Mar 13, 2019
Contact name Léonie Morin-Doré
Organization name Laval University
Department Animal Sciences
Street address 2440, boulevard Hochelaga
City Quebec
State/province Quebec
ZIP/Postal code G1V 0A6
Country Canada
 
Platforms (1)
GPL13226 Agilent-028298 Embryogene Bovine 45K microarray
Samples (4)
GSM2266918 Data Heifer #10989
GSM2266919 Data Heifer #10991
GSM2266920 Data Heifer #10994
This SubSeries is part of SuperSeries:
GSE85438 Transcriptomic evaluation of bovine embryo quality on blastocysts obtained from peri-pubertal oocyte donors
Relations
BioProject PRJNA338458

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE85436_RAW.tar 7.6 Mb (http)(custom) TAR (of TXT)
GSE85436_normalized_data_with_controls_8vs14.txt.gz 1.0 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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