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| Status |
Public on Sep 03, 2016 |
| Title |
Expression data from BPH resistant and susceptible rice varieties |
| Organism |
Oryza sativa |
| Experiment type |
Expression profiling by array
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| Summary |
Bph6 is a gene that confers rice high resistance to its devastating pest BPH. Understanding the molecular responses of the resistant and susceptible varieties would pave the way to controlling the pest more effectively.
To better understand the molecular mechanism underlying resistance to BPH mediated by Bph6, we conducted a genome-wide microarray analysis of NIL-BPH9 and 9311 at the early stage of BPH infestation.
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| Overall design |
Leaf shealth of resistant and susceptible rice plants were collected at 0(without BPH infestation),6, 48h by BPH infestation for RNA extraction and hybridization on Affymetrix microarrays.
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| Contributor(s) |
He G, Guo J |
| Citation missing |
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| Submission date |
Sep 02, 2016 |
| Last update date |
Dec 27, 2017 |
| Contact name |
Jianping Guo |
| E-mail(s) |
[email protected]
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| Organization name |
National Key Laboratory of Hybrid Rice
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| Department |
College of Life Sciences
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| Street address |
Wuhan University
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| City |
Wuhan |
| ZIP/Postal code |
430072 |
| Country |
China |
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| Platforms (1) |
| GPL2025 |
[Rice] Affymetrix Rice Genome Array |
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| Samples (18)
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| GSM2301194 |
NIL-Bph6 leaf shealth without BPH infestation (at 0h), biological rep1 |
| GSM2301195 |
NIL-Bph6 leaf shealth without BPH infestation (at 0h), biological rep2 |
| GSM2301196 |
NIL-Bph6 leaf shealth without BPH infestation (at 0h), biological rep3 |
| GSM2301197 |
NIL-Bph6 leaf shealth with 6h BPH infestation, biological rep1 |
| GSM2301198 |
NIL-Bph6 leaf shealth with 6h BPH infestation, biological rep2 |
| GSM2301199 |
NIL-Bph6 leaf shealth with 6h BPH infestation, biological rep3 |
| GSM2301200 |
NIL-Bph6 leaf shealth with 48h BPH infestation, biological rep1 |
| GSM2301201 |
NIL-Bph6 leaf shealth with 48h BPH infestation, biological rep2 |
| GSM2301202 |
NIL-Bph6 leaf shealth with 48h BPH infestation, biological rep3 |
| GSM2301203 |
NIL-Bph6-RNAi leaf shealth without BPH infestation (at 0h), biological rep1 |
| GSM2301204 |
NIL-Bph6-RNAi leaf shealth without BPH infestation (at 0h), biological rep2 |
| GSM2301205 |
NIL-Bph6-RNAi leaf shealth without BPH infestation (at 0h), biological rep3 |
| GSM2301206 |
NIL-Bph6-RNAi leaf shealth with 6h BPH infestation, biological rep1 |
| GSM2301207 |
NIL-Bph6-RNAi leaf shealth with 6h BPH infestation, biological rep2 |
| GSM2301208 |
NIL-Bph6-RNAi leaf shealth with 6h BPH infestation, biological rep3 |
| GSM2301209 |
NIL-Bph6-RNAi leaf shealth with 48h BPH infestation, biological rep1 |
| GSM2301210 |
NIL-Bph6-RNAi leaf shealth with 48h BPH infestation, biological rep2 |
| GSM2301211 |
NIL-Bph6-RNAi leaf shealth with 48h BPH infestation, biological rep3 |
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| Relations |
| BioProject |
PRJNA341577 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE86379_RAW.tar |
79.3 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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