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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 20, 2016 |
| Title |
Crystal structure of Pseudomonas aeruginosa RsaL bound to promoter DNA reaffirms its role as a global regulator involved in quorum-sensing |
| Organism |
Pseudomonas aeruginosa |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Pseudomonas aeruginosa possesses at least three well-defined quorum-sensing (QS) (las, rhl, and pqs) systems. These QS systems control a variety of important functions including virulence. RsaL is a QS repressor that reduces QS signal production and ensures homeostasis by functioning in opposition to LasR. However, its regulatory role in signal homeostasis remains elusive. Here, we conducted a ChIP-seq assay and revealed that RsaL bound to two new targets, the intergenic regions of PA2228/PA2229 and pqsH/cdpR, which are required for PQS synthesis. Deletion of rsaL reduced the transcription of pqsH and cdpR, thus decreasing PQS signal production. The ΔrsaL strain exhibited increased pyocyanin production and reduced biofilm formation, which are dependent on CdpR or PqsH activity. In addition, we solved the structure of the RsaL-DNA complex at a 2.4 Å resolution. Although the overall sequence similarity is quite low, RsaL folds into a HTH-like structure, which is conserved among many transcriptional regulators. Complementation results of the rsaL knockout cells with different rsaL mutants further confirmed the critical role of the DNA-binding residues (including Arg20, Gln27, Gln38, Gly35, Ser37, and Ser42) that are essential for DNA binding. Our findings reveal new targets of RsaL and provide insight into the detailed characterization of the RsaL-DNA interaction.
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| Overall design |
ChIP-seq of RsaL in Pseudomonas aeruginosa
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| Contributor(s) |
Liang H |
| Citation(s) |
27924027 |
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| Submission date |
Sep 21, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Xin Deng |
| E-mail(s) |
[email protected]
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| Phone |
852-34425693
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| Organization name |
City University of Hong Kong
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| Department |
Biomedical Sciences
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| Street address |
To Yuen Building
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| City |
Hong Kong |
| ZIP/Postal code |
60637 |
| Country |
Hong Kong |
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| Platforms (1) |
| GPL18644 |
Illumina HiSeq 2000 (Pseudomonas aeruginosa) |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA343734 |
| SRA |
SRP090216 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE87157_rsalvsvmacs2_peaks.xls.gz |
10.0 Kb |
(ftp)(http) |
XLS |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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