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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 03, 2019 |
| Title |
The gene expression signatures for Huh7 cell lines with HCC-associated HBV variants in small S proteins transfection |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
To further investigating the novel NGS-defined HCC-associated SNVs in small S region involve hepatocarcinogenesis pathways, the plasmid pEGFP-N1-HBVS-genoB was used as the template for mutagenesis to create mutations T216C, A273G, and double mutant T216C/A273G at small surface (S) region, with the QuikChange site-directed mutagenesis kit (Stratagene, La Jolla, CA). The plasmid pEGFP-N1-HBVS-genoC was used as the template for mutagenesis to create mutations A293G, C446G, A456G, A293G/C446G, C446G/A456G, A293G/A456G, and triple mutant A293G/C446G/A456G at small S region. Wild-type or mutant envelope expression vectors were transfected into Huh7 cells by using lipofectamine 3000 (Thermo Fisher Scientific) according to the manual of the manufacturer. All mutants were confirmed by DNA sequencing. all the novel NGS-defined HCC-associated SNVs in small S region could involve hepatocarcinogenesis pathways with inducing cell apoptosis, regulating cell death and survival, affecting DNA replication, recombination, and repair.
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| Overall design |
The plasmid pEGFP-N1-HBVS-genoB was used as the template for mutagenesis to create mutations T216C, A273G, and double mutant T216C/A273G at small surface (S) region, with the QuikChange site-directed mutagenesis kit (Stratagene, La Jolla, CA). The plasmid pEGFP-N1-HBVS-genoC was used as the template for mutagenesis to create mutations A293G, C446G, A456G, A293G/C446G, C446G/A456G, A293G/A456G, and triple mutant A293G/C446G/A456G at small S region. Wild-type or mutant envelope expression vectors were transfected into Huh7 cells by using lipofectamine 3000 (Thermo Fisher Scientific) according to the manual of the manufacturer. The gene expression were compared between each group.
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| Contributor(s) |
Liu W, Chang T |
| Citation(s) |
28696069 |
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| Submission date |
Oct 11, 2016 |
| Last update date |
Jan 02, 2020 |
| Contact name |
Wen-Chun Liu |
| E-mail(s) |
[email protected]
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| Organization name |
National Cheng Kung University
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| Street address |
138 Sheng-Li Road
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| City |
Tainan |
| ZIP/Postal code |
70403 |
| Country |
Taiwan |
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| Platforms (1) |
| GPL21061 |
Agilent-039494 8x60k Human Whole Genome Microarray Gene expression (Probe name version) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA347646 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE87804_RAW.tar |
149.0 Mb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
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