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Series GSE9526 Query DataSets for GSE9526
Status Public on Nov 10, 2007
Title Expression data from cumulus cells that surround oocytes resulting in early or late cleaving embryos
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Besides the established selection criteria based on embryo morphology and blastomere number, new parameters for embryo viability are needed to improve the clinical outcome of in vitro fertilization (IVF) and more particular of elective single embryo transfer (eSET). The aim of the study was to analyse genome-wide whether the embryo viability was reflected by the expression of genes in the oocyte surrounding cumulus cells. Early cleavage (EC) was chosen as a parameter for embryo viability.
Keywords: class comparison
 
Overall design Consenting patients visiting the IVF clinic underwent an IVF or ICSI treatment. Immediately following ultrasound-guided cumulus-oocyte-complex (COC) retrieval, a proportion of the cumulus cells surrounding the oocyte were removed. Gene expression in cumulus cells from eight oocytes resulting in an early cleavage embryo (EC-CC; n=8) and from eight oocytes resulting in a non-EC embryo (NEC-CC; n=8) derived from six patients were analysed using microarrays (n=16). To exclude a differential gene expression due to differences in patient characteristics, samples were paired. From four patients both an EC-CC and a NEC-CC sample were used. From two additional patients two EC-CC as well as two NEC-CC samples were used.
 
Contributor(s) van Montfoort A, Geraedts J, Dumoulin J, Stassen A, Evers J, Ayoubi T
Citation(s) 18204071
Submission date Nov 06, 2007
Last update date Mar 25, 2019
Contact name Aafke van Montfoort
E-mail(s) [email protected]
Organization name Academic hospital Maastricht
Department Obstetrics & Gynaecology
Lab IVF laboratory
Street address P.O.Box 5800
City maastricht
ZIP/Postal code 6202 AZ
Country Netherlands
 
Platforms (1)
GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Samples (16)
GSM241222 cumulus cells-early cleavage-rep1a
GSM241223 cumulus cells-early cleavage-rep1b
GSM241224 cumulus cells-early cleavage-rep2
Relations
BioProject PRJNA103335

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE9526_RAW.tar 80.7 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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