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Series GSE95722 Query DataSets for GSE95722
Status Public on Mar 20, 2017
Title ChIP-seq analysis of the LuxR-type regulator VjbR reveals novel insights into the Brucella virulence gene expression network
Organism Brucella abortus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary We report ChIP-seq and RNA-seq analyses of the Brucella abortus LuxR-type transcription factor VjbR
 
Overall design The analyses were performed with wild-type or vjbR mutant bacteria incubated under conditions mimicking the intracellular environment encountered by Brucella within the host cell.
 
Contributor(s) Sieira R
Citation(s) 28334833
Submission date Mar 06, 2017
Last update date May 15, 2019
Contact name Sieira Rodrigo
E-mail(s) [email protected]
Organization name Fundacion Instituto Leloir
Street address Av. Patricias Argentinas 435
City Buenos Aires
ZIP/Postal code C1405 BWE
Country Argentina
 
Platforms (1)
GPL23154 Illumina HiSeq 2000 (Brucella abortus)
Samples (12)
GSM2522737 IP_WT1
GSM2522738 IP_WT2
GSM2522739 IP_WT3
Relations
BioProject PRJNA378242
SRA SRP101443

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE95722_DESeq_RNAseq_VjbR_results.tsv.gz 188.9 Kb (ftp)(http) TSV
GSE95722_Peaks_IP_WT1.narrowPeak.gz 21.0 Kb (ftp)(http) NARROWPEAK
GSE95722_Peaks_IP_WT2.narrowPeak.gz 19.7 Kb (ftp)(http) NARROWPEAK
GSE95722_Peaks_IP_WT3.narrowPeak.gz 21.8 Kb (ftp)(http) NARROWPEAK
GSE95722_Peaks_IP_vjbR.narrowPeak.gz 6.2 Kb (ftp)(http) NARROWPEAK
GSE95722_RAW.tar 193.2 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Processed data are available on Series record
Raw data are available in SRA
Processed data provided as supplementary file

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