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Series GSE98091 Query DataSets for GSE98091
Status Public on Jan 01, 2018
Title Transcriptomic analysis of the HOTAIR-regulated genes
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary An integrated RNA sequencing transcriptomic and quantitative proteomic analysis were employed to systematically explore the regulatory role of HOTAIR in HCC. A total of 673 transcripts and 298 proteins were identified to be dysregulated after HOTAIR inhibition.
 
Overall design Examine the overall transcriptomic changes in HepG2 cells after HOTAIR knockdown by RNA sequencing, in triplicate, using Illumina Hiseq 2000 platform.
 
Contributor(s) Xiong Q, Ge F
Citation(s) 29079719
Submission date Apr 24, 2017
Last update date Sep 19, 2019
Contact name Xiong Qian
E-mail(s) [email protected]
Phone 02768780730
Organization name Institute of Hydrobiology, the Chinese Academy of Sciences
Street address Donghu South Road 7, Wuhan 430072, People’s Republic of China
City Wuhan
State/province Hubei
ZIP/Postal code 430072
Country China
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (6)
GSM2586967 HepG2_siHOTAIR-1
GSM2586968 HepG2_siHOTAIR-2
GSM2586969 HepG2_siHOTAIR-3
Relations
BioProject PRJNA383988
SRA SRP105050

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE98091_siHOTAIR-vs-siNC.DESeq.diff.txt.gz 472.5 Kb (ftp)(http) TXT
GSE98091_siHOTAIR-vs-siNC.DESeq.diffFilter.txt.gz 22.8 Kb (ftp)(http) TXT
GSE98091_siHOTAIR-vs-siNC.diff.txt.gz 884.6 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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