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Series GSE99656 Query DataSets for GSE99656
Status Public on Jun 06, 2017
Title SHP2 Is Required for BCR-ABL1-Induced Hematologic Neoplasms
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary BCR-ABL1-targeting tyrosine kinase inhibitors (TKIs) have revolutionized treatment of Philadelphia chromosome-positive (Ph+) hematologic neoplasms. Nevertheless, acquired TKI resistance remains a major problem in chronic myeloid leukemia (CML), and TKIs are less effective against Ph+ B-cell acute lymphoblastic leukemia (B-ALL). GAB2, a scaffolding adaptor that binds and activates SHP2, is essential for leukemogenesis by BCR-ABL1, and a GAB2 mutant lacking SHP2 binding cannot mediate leukemogenesis. Using a genetic loss-of-function approach and bone marrow transplantation (BMT) models for CML and BCR-ABL1+ B-ALL, we show that SHP2 is required for BCR-ABL1-evoked myeloid and lymphoid neoplasia. Ptpn11 deletion impairs initiation and maintenance of CML-like myeloproliferative neoplasm, and compromises induction of BCR-ABL1+ B-ALL. SHP2, and specifically, its SH2 domains, PTP activity and C-terminal tyrosines, is essential for BCR-ABL1+, but not WT, pre-B cell proliferation. The MEK/ERK pathway is regulated by SHP2 in WT and BCR-ABL1+ pre-B cells, but is only required for the proliferation of BCR-ABL1+ cells. SHP2 is required for SRC family kinase (SFK) activation only in BCR-ABL1+ pre-B cells. RNAseq reveals distinct SHP2-dependent transcriptional programs in BCR-ABL1+ and WT pre-B cells. Our results suggest that SHP2, via SFKs and ERK, represses MXD3/4 to facilitate a MYC-dependent proliferation program in BCR-ABL1-transformed pre-B cells.
 
Overall design RNA-Seq expression profiling of 16 mouse pre-B cell samples:
4 BCR-ABL/SHP2+/+
4 BCR-ABL/SHP2-/+
4 BCR-ABL/SHP2+/-
4 BCR-ABL/SHP2-/-
 
Contributor(s) Gu S, Sayad A
Citation(s) 28804122
Submission date Jun 05, 2017
Last update date Jul 25, 2021
Contact name Pamela Ohashi
E-mail(s) [email protected]
Organization name Princess Margaret Cancer Centre
Lab Ohashi Lab
Street address 610 University Ave
City Toronto
State/province Ontario
ZIP/Postal code M5G 2C1
Country Canada
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (16)
GSM2649337 BCRABL_MINUS_SHP2_MINUS_REP_0
GSM2649338 BCRABL_MINUS_SHP2_MINUS_REP_1
GSM2649339 BCRABL_MINUS_SHP2_MINUS_REP_2
Relations
BioProject PRJNA389249
SRA SRP108591

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE99656_ALL_FPKM.txt.gz 1.0 Mb (ftp)(http) TXT
GSE99656_RAW.tar 2.1 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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