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Sample GSM100203

Query DataSets for GSM100203

Status

Public on Aug 31, 2010

Title

Expression data of CC_LN05

Sample type

RNA

Source name

Patient_05

Organism

Homo sapiens

Characteristics

Tissue: Colorecal Cancer

Extracted molecule

total RNA

Extraction protocol

Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer's instructions.

Label

biotin

Label protocol

Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures

Description

Training-Lymph(-)

Data processing

Affymetrix Microarray Suite version 5.0

Submission date

Mar 13, 2006

Last update date

Aug 31, 2009

Contact name

Toshiaki Watanabe

Phone

81-3-5800-8653

Organization name

University of Tokyo

Department

Department of Surgical Oncology

Street address

7-3-1, Hongo

City

Bunkyo-ku

State/province

Tokyo

ZIP/Postal code

113-8655

Country

Japan

Platform ID

GPL570

Series (1)

GSE4459

Gene expression signature and the prediction of lymph node metastases

Data table header descriptions
ID_REF
VALUE	MAS5-calculated Signal intensity
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)

Data table
ID_REF	VALUE	ABS_CALL
1007_s_at	590.7	P
1053_at	82.9	P
117_at	12	A
121_at	85.8	P
1255_g_at	4.8	A
1294_at	76.2	P
1316_at	23.3	P
1320_at	3	A
1405_i_at	8.7	P
1431_at	5.9	A
1438_at	301.9	P
1487_at	157.2	M
1494_f_at	14.8	A
1552256_a_at	399.9	P
1552257_a_at	288.6	P
1552258_at	5.9	A
1552261_at	1.2	A
1552263_at	28.6	P
1552264_a_at	50.8	P
1552266_at	10.4	A

Total number of rows: 54675

Table truncated, full table size 927 Kbytes.

Supplementary data files not provided