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Sample GSM1003284 Query DataSets for GSM1003284
Status Public on Jan 01, 2015
Title DW301_WT_M
Sample type RNA
 
Source name 5091212024_C
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype/variation: WT
gender: Male
age: embryonic day 15
tissue: frontal cortex
Treatment protocol Mouse frontal cortex was sampled from embryonic day 15 transgenic animals and littermates control using disecction kits.
Growth protocol Mice harboring a Cyfip1 spanning BAC clone (RP24-333C15) were generated in the UCLA transgenic core (http://tmc.ctrl.ucla.edu/tg-core/) by injection into C57BL/6J pronuclei. Transgenic mice were identified by PCR screening of tail derived DNA.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from embryonic day 15 frontal cortex from transgenic animals (n=3) and littermates controls (n=3) using the Qiagen RNeasy Kit. RNA quantity and quality was assessed using a Nanodrop (Nanodrop Technologies) and the Agilent Bioanalyzer (Agilent Technologies), respectively. Total RNA (200ng) was amplified, biotinylated and hybridized on Illumina Mouse ref-8 v2.0 BeadChip arrays, querying the expression of ~25,600 well-annotated Refseq transcripts, as per manufacturer's protocol.
Label Biotin
Label protocol Biotin
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Data processing BeadStudio, quantile normalization
 
Submission date Sep 13, 2012
Last update date Jan 01, 2015
Contact name Giovanni Coppola
E-mail(s) [email protected]
Phone 310-794-4172
Organization name UCLA
Department Psychiatry and Neurology
Lab Neurogenetics
Street address 1524 Gonda, 695 Charles Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE40852 Overexpression of disease-associated CYFIP1 alters cellular and synaptic morphology through mTOR dysregulation of mTOR signaling

Data table header descriptions
ID_REF
VALUE Log2 transformed, quantile normalized expresssion levels

Data table
ID_REF VALUE
ILMN_1212607 6.876384671
ILMN_1212612 10.04419921
ILMN_1212619 6.91866332
ILMN_1212628 7.242649984
ILMN_1212632 7.784126646
ILMN_1212636 11.63321425
ILMN_1212637 9.387309136
ILMN_1212645 10.5855293
ILMN_1212648 9.235982982
ILMN_1212653 9.060981079
ILMN_1212672 8.75539249
ILMN_1212682 6.89802943
ILMN_1212683 6.625284217
ILMN_1212685 6.645188154
ILMN_1212692 6.595348057
ILMN_1212693 7.135634091
ILMN_1212695 6.806245651
ILMN_1212698 6.722113083
ILMN_1212702 14.50874169
ILMN_1212703 7.528740623

Total number of rows: 25697

Table truncated, full table size 624 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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