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Sample GSM1008605 Query DataSets for GSM1008605
Status Public on Sep 25, 2012
Title Duke_DnaseSeq_Urothelia
Sample type SRA
 
Source name Urothelia
Organism Homo sapiens
Characteristics datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
labversion: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female
replicate: 1,2
cell: Urothelia
cell organism: human
cell description: primary ureter cell culture of urothelial cells derived from a 12 year-old girl and immortalized by transfection with a temperature-sensitive SV-40 large T antigen gene
cell karyotype: normal
cell sex: F
labversion: baseAlignCounts.pl v 1
Biomaterial provider Dr. D Sens at University of N. Dakota
Growth protocol Urothelia_Crawford_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
 
Submission date Sep 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) [email protected]
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE32970 Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)
Relations
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX189432
BioSample SAMN01730123
Named Annotation GSM1008605_hg19_wgEncodeOpenChromDnaseUrothelBaseOverlapSignalV2.bigWig
Named Annotation GSM1008605_hg19_wgEncodeOpenChromDnaseUrothelSigV2.bigWig

Supplementary file Size Download File type/resource
GSM1008605_hg19_wgEncodeOpenChromDnaseUrothelBaseOverlapSignalV2.bigWig 1.4 Gb (ftp)(http) BIGWIG
GSM1008605_hg19_wgEncodeOpenChromDnaseUrothelPkV2.narrowPeak.gz 1.8 Mb (ftp)(http) NARROWPEAK
GSM1008605_hg19_wgEncodeOpenChromDnaseUrothelSigV2.bigWig 3.1 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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