NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1010553 Query DataSets for GSM1010553
Status Public on Oct 18, 2012
Title Day20_A
Sample type RNA
 
Source name Day20
Organism Homo sapiens
Characteristics tissue: Peripheral blood
culture condition: CD138+ Plasma cells sorted on CD138 and 7-AAD, generated in the upper compartment of a transwell system after 7 days of IL-6, IFN-α and supplemented media, with M2-10B4 in the lower compartment.
gender: Male
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol and amplified using Illumina® TotalPrepTM-96 RNA Amplification Kit
Label Biotin
Label protocol Standard Illumina protocol
 
Hybridization protocol Standard Illumina protocol
Scan protocol Arrays were scanned on a BeadArray reader
Data processing Data were quantile normalised using Lumi for R [64-bit R version 2.15.1 (2012-06-22), lumi version 2.8.0].
 
Submission date Sep 27, 2012
Last update date Oct 18, 2012
Contact name Matthew Anthony Care
E-mail(s) [email protected]
Organization name The University of York
Department Department of Biology
Lab Bioscience Technology Facility, Data Science Hub
Street address Wentworth Way
City York
State/province North Yorkshire
ZIP/Postal code YO10 5DD
Country United Kingdom
 
Platform ID GPL10558
Series (1)
GSE41208 In vitro generation of long-lived human Plasma Cells

Data table header descriptions
ID_REF
VALUE log2 Quantile-Normalised
Pval

Data table
ID_REF VALUE Pval
ILMN_1762337 7.631233095 0.05065
ILMN_2055271 7.577964538 0.08182
ILMN_1736007 7.424051207 0.39351
ILMN_2383229 7.451559033 0.33117
ILMN_1806310 7.351252951 0.62727
ILMN_1779670 7.433600427 0.37792
ILMN_1653355 7.315537059 0.72987
ILMN_1717783 7.140380333 0.98701
ILMN_1705025 7.729458713 0.02727
ILMN_1814316 7.486226139 0.23247
ILMN_2359168 7.281866346 0.81558
ILMN_1731507 7.329748898 0.68052
ILMN_1787689 7.46703609 0.27922
ILMN_3241953 7.62014216 0.05584
ILMN_1745607 7.401333079 0.45455
ILMN_2136495 7.30638233 0.76104
ILMN_1668111 7.340490791 0.66104
ILMN_2295559 7.45764915 0.31039
ILMN_1735045 7.469412097 0.27403
ILMN_1680754 7.29495179 0.78312

Total number of rows: 47323

Table truncated, full table size 1467 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap