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Sample GSM1014460 Query DataSets for GSM1014460
Status Public on Oct 01, 2013
Title hepatoblast derived tumor [HB5]
Sample type RNA
 
Source name HB5
Organism Mus musculus
Characteristics strain: C57BL/6
cell type: hepatoblast derived tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Qiagen mini kit. Quality control and measurement were performed using NanoDrop and Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion Totalprep RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Tumor
SAMPLE 15
Data processing Data was processed by means of Genome Studio v2011 from illumina, Inc.
 
Submission date Oct 03, 2012
Last update date Oct 01, 2013
Contact name Jesper B Andersen
Organization name Copenhagen University
Department Biotech Research and Innovation Centre
Lab Andersen Group
Street address Ole Maaloes Vej 5
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platform ID GPL6885
Series (1)
GSE41312 Modeling Pathogenesis of Primary Liver Cancer in Lineage Specific Cell Types

Data table header descriptions
ID_REF
VALUE Quantile normalized with background noise subtraction
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1691.421 0
ILMN_2721178 420.6312 0
ILMN_3033922 359.7323 0
ILMN_3092673 1814.466 0
ILMN_2816356 12.85639 0.1278196
ILMN_2808939 962.5625 0
ILMN_2634564 524.4364 0
ILMN_2737647 1.320702 0.4172932
ILMN_2734484 259.2385 0
ILMN_2952292 49.53979 0.00877193
ILMN_2699078 -5.834627 0.7393484
ILMN_1213681 167.2564 0
ILMN_2735413 24.48215 0.04511278
ILMN_2735415 17.33841 0.0839599
ILMN_2891688 391.7209 0
ILMN_2637698 1083.753 0
ILMN_2674228 231.4806 0
ILMN_2601546 10.7116 0.1629073
ILMN_1230831 -2.24958 0.575188
ILMN_2848071 8.328133 0.2005012

Total number of rows: 25697

Table truncated, full table size 741 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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