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Sample GSM1014468 Query DataSets for GSM1014468
Status Public on Oct 01, 2013
Title hepatoblast derived tumor [HB13]
Sample type RNA
 
Source name HB13
Organism Mus musculus
Characteristics strain: C57BL/6
cell type: hepatoblast derived tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Qiagen mini kit. Quality control and measurement were performed using NanoDrop and Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion Totalprep RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Tumor
SAMPLE 23
Data processing Data was processed by means of Genome Studio v2011 from illumina, Inc.
 
Submission date Oct 03, 2012
Last update date Oct 01, 2013
Contact name Jesper B Andersen
Organization name Copenhagen University
Department Biotech Research and Innovation Centre
Lab Andersen Group
Street address Ole Maaloes Vej 5
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platform ID GPL6885
Series (1)
GSE41312 Modeling Pathogenesis of Primary Liver Cancer in Lineage Specific Cell Types

Data table header descriptions
ID_REF
VALUE Quantile normalized with background noise subtraction
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 701.8542 0
ILMN_2721178 118.1529 0
ILMN_3033922 213.0462 0
ILMN_3092673 1021.76 0
ILMN_2816356 59.16735 0
ILMN_2808939 606.7841 0
ILMN_2634564 229.7817 0
ILMN_2737647 6.083822 0.1441103
ILMN_2734484 160.0236 0
ILMN_2952292 24.04245 0.002506266
ILMN_2699078 -13.62929 0.9598997
ILMN_1213681 138.7516 0
ILMN_2735413 5.145617 0.179198
ILMN_2735415 23.12453 0.005012531
ILMN_2891688 110.0708 0
ILMN_2637698 1765.703 0
ILMN_2674228 80.02937 0
ILMN_2601546 0.007779646 0.3809524
ILMN_1230831 0.1721893 0.3709273
ILMN_2848071 29.43088 0.001253133

Total number of rows: 25697

Table truncated, full table size 721 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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