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Sample GSM1014478 Query DataSets for GSM1014478
Status Public on Oct 01, 2013
Title adult hepatocyte derived tumor [AH3]
Sample type RNA
 
Source name AH3
Organism Mus musculus
Characteristics strain: C57BL/6
cell type: adult hepatocyte derived tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Qiagen mini kit. Quality control and measurement were performed using NanoDrop and Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion Totalprep RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Tumor
SAMPLE 33
Data processing Data was processed by means of Genome Studio v2011 from illumina, Inc.
 
Submission date Oct 03, 2012
Last update date Oct 01, 2013
Contact name Jesper B Andersen
Organization name Copenhagen University
Department Biotech Research and Innovation Centre
Lab Andersen Group
Street address Ole Maaloes Vej 5
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platform ID GPL6885
Series (1)
GSE41312 Modeling Pathogenesis of Primary Liver Cancer in Lineage Specific Cell Types

Data table header descriptions
ID_REF
VALUE Quantile normalized with background noise subtraction
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1643.576 0
ILMN_2721178 344.5711 0
ILMN_3033922 208.9485 0
ILMN_3092673 1648.479 0
ILMN_2816356 41.94508 0.001253133
ILMN_2808939 574.2368 0
ILMN_2634564 546.7259 0
ILMN_2737647 -5.88246 0.697995
ILMN_2734484 254.5909 0
ILMN_2952292 49.78509 0
ILMN_2699078 -4.133399 0.6027569
ILMN_1213681 190.8207 0
ILMN_2735413 10.67309 0.112782
ILMN_2735415 17.93255 0.03634085
ILMN_2891688 226.478 0
ILMN_2637698 1286.074 0
ILMN_2674228 215.8758 0
ILMN_2601546 2.821518 0.2794486
ILMN_1230831 -3.131913 0.5538847
ILMN_2848071 26.70299 0.003759399

Total number of rows: 25697

Table truncated, full table size 730 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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