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Status
Public on Oct 18, 2006
Title
Expression data of CCMS_40
Sample type
RNA
Source name
Patient_40
Organism
Homo sapiens Characteristics
Tissue: Colorecal Cancer
Extracted molecule
total RNA
Extraction protocol
Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer's instructions.
Label
biotin
Label protocol
Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Training-Lymph(-)
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Mar 27, 2006
Last update date
Jan 20, 2010
Contact name
Toshiaki Watanabe
Phone
81-3-5800-8653
Organization name
University of Tokyo
Department
Department of Surgical Oncology
Street address
7-3-1, Hongo
City
Bunkyo-ku
State/province
Tokyo
ZIP/Postal code
113-8655
Country
Japan
Platform ID
GPL570 Series (2)
GSE4459 Gene expression signature and the prediction of lymph node metastases
GSE4554 Gene expression signature of colorectal cancer with microsatellite instability.
Data table header descriptions ID_REF VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
Data table ID_REF VALUE ABS_CALL 1007_s_at
514.7
P
1053_at
165.6
P
117_at
19.3
P
121_at
138.7
P
1255_g_at
9.9
A
1294_at
84.4
P
1316_at
30.1
P
1320_at
10.5
A
1405_i_at
58.9
P
1431_at
1.1
A
1438_at
217.1
P
1487_at
290.7
P
1494_f_at
20
A
1552256_a_at
408.2
P
1552257_a_at
519.8
P
1552258_at
11.1
A
1552261_at
14.8
A
1552263_at
57.3
P
1552264_a_at
89.7
P
1552266_at
20.6
P
54675 933 Kbytes .Supplementary data files not provided
