GEO help: Mouse over screen elements for information.
Status
Public on Oct 18, 2006
Title
Expression data of CCMS_49
Sample type
RNA
Source name
Patient_49
Organism
Homo sapiens Characteristics
Tissue: Colorecal Cancer
Extracted molecule
total RNA
Extraction protocol
Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer's instructions.
Label
biotin
Label protocol
Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
MSS, proximal
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Mar 27, 2006
Last update date
Jan 20, 2010
Contact name
Toshiaki Watanabe
Phone
81-3-5800-8653
Organization name
University of Tokyo
Department
Department of Surgical Oncology
Street address
7-3-1, Hongo
City
Bunkyo-ku
State/province
Tokyo
ZIP/Postal code
113-8655
Country
Japan
Platform ID
GPL570 Series (2)
GSE4459 Gene expression signature and the prediction of lymph node metastases
GSE4554 Gene expression signature of colorectal cancer with microsatellite instability.
Data table header descriptions ID_REF VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
Data table ID_REF VALUE ABS_CALL 1007_s_at
676.8
P
1053_at
43.2
P
117_at
16.7
A
121_at
178.5
P
1255_g_at
12.1
A
1294_at
156.9
P
1316_at
17.9
P
1320_at
20.3
A
1405_i_at
88.2
P
1431_at
6
A
1438_at
19.9
A
1487_at
448.7
P
1494_f_at
38
P
1552256_a_at
60.8
P
1552257_a_at
590.3
P
1552258_at
4.4
A
1552261_at
35.1
P
1552263_at
56.2
P
1552264_a_at
51.8
P
1552266_at
8.1
A
54675 932 Kbytes .Supplementary data files not provided
