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Status
Public on Oct 18, 2006
Title
Expression data of CCMS_80
Sample type
RNA
Source name
Patient_80
Organism
Homo sapiens Characteristics
Tissue: Colorecal Cancer
Extracted molecule
total RNA
Extraction protocol
Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer's instructions.
Label
biotin
Label protocol
Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
MSI, proximal
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Mar 27, 2006
Last update date
Jan 20, 2010
Contact name
Toshiaki Watanabe
Phone
81-3-5800-8653
Organization name
University of Tokyo
Department
Department of Surgical Oncology
Street address
7-3-1, Hongo
City
Bunkyo-ku
State/province
Tokyo
ZIP/Postal code
113-8655
Country
Japan
Platform ID
GPL570 Series (2)
GSE4459 Gene expression signature and the prediction of lymph node metastases
GSE4554 Gene expression signature of colorectal cancer with microsatellite instability.
Data table header descriptions ID_REF VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
Data table ID_REF VALUE ABS_CALL 1007_s_at
997.8
P
1053_at
127.4
P
117_at
32.1
M
121_at
105
P
1255_g_at
9.1
A
1294_at
140.4
P
1316_at
30.2
P
1320_at
13.8
A
1405_i_at
25.2
P
1431_at
2.5
A
1438_at
3.8
A
1487_at
533.8
P
1494_f_at
22.2
A
1552256_a_at
266
P
1552257_a_at
308.5
P
1552258_at
12
A
1552261_at
22
A
1552263_at
68.2
P
1552264_a_at
239.9
P
1552266_at
25.1
A
54675 937 Kbytes .Supplementary data files not provided
