GEO help: Mouse over screen elements for information.
Status
Public on Oct 18, 2006
Title
Expression data of CCMS_82
Sample type
RNA
Source name
Patient_82
Organism
Homo sapiens Characteristics
Tissue: Colorecal Cancer
Extracted molecule
total RNA
Extraction protocol
Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer's instructions.
Label
biotin
Label protocol
Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
MSI, proximal
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Mar 27, 2006
Last update date
Jan 20, 2010
Contact name
Toshiaki Watanabe
Phone
81-3-5800-8653
Organization name
University of Tokyo
Department
Department of Surgical Oncology
Street address
7-3-1, Hongo
City
Bunkyo-ku
State/province
Tokyo
ZIP/Postal code
113-8655
Country
Japan
Platform ID
GPL570 Series (2)
GSE4459 Gene expression signature and the prediction of lymph node metastases
GSE4554 Gene expression signature of colorectal cancer with microsatellite instability.
Data table header descriptions ID_REF VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
Data table ID_REF VALUE ABS_CALL 1007_s_at
930
P
1053_at
151.1
P
117_at
19.6
P
121_at
89.9
P
1255_g_at
13.6
A
1294_at
168.8
P
1316_at
26.7
P
1320_at
4.3
A
1405_i_at
76.9
P
1431_at
23.1
P
1438_at
235.4
P
1487_at
314.1
P
1494_f_at
8.2
A
1552256_a_at
276.3
P
1552257_a_at
525.1
P
1552258_at
14.4
M
1552261_at
4.6
A
1552263_at
49.6
P
1552264_a_at
114.1
P
1552266_at
4.6
A
54675 934 Kbytes .Supplementary data files not provided
