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Sample GSM103778 Query DataSets for GSM103778
Status Public on Apr 11, 2006
Title Treatment: DHT; time 6 hrs; repeat: 3; chip B
Sample type RNA
 
Source name LNCaP cells; Human, prostate carcinoma, metastasized to lymph node; Maintained in DMEM/8% charcoal-stripped serum for 3 days before treatment.
Organism Homo sapiens
Characteristics In this experiment LNCaP cells
were treated with Vehicle (ethanol),
DHT (10 nM) or RTI-6413-018 (100 nM).
Treatment was done for 6 and 24 hrs.
The entire experiment was repeated 3 times.
Extracted molecule total RNA
Label Biotin
 
Description A study of the SARM-regulated gene expression in LNCaP prostate carcinoma cells
Data processing Standard Affymetrix scanning/normalization process
 
Submission date Apr 07, 2006
Last update date Apr 10, 2006
Contact name Dmitri A Kazmin
E-mail(s) [email protected]
Organization name Stanford University
Department Institute for Immunity, Transplantation and Infection
Lab Bali Pulendran
Street address 240 Pasteur Dr
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Platform ID GPL97
Series (1)
GSE4636 Differential redulation of gene expression by an RTI SARM and canonical agonist of androgen receptor

Data table header descriptions
ID_REF
0068_1720_H133B_T6.3_Stat Pairs Probe pairs available (PM/MM)
0068_1720_H133B_T6.3_Stat Pairs Used Probe pairs used (PM/MM)
VALUE Absolute measured signal
ABS_CALL Present/absent call
DETECTION P-VALUE P-value for the P/A call

Data table
ID_REF 0068_1720_H133B_T6.3_Stat Pairs 0068_1720_H133B_T6.3_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 879.2 P 0.000972
AFFX-BioB-M_at 20 20 1825.1 P 0.00007
AFFX-BioB-3_at 20 20 1049 P 0.000127
AFFX-BioC-5_at 20 20 2342.9 P 0.000195
AFFX-BioC-3_at 20 20 1801.6 P 0.00007
AFFX-BioDn-5_at 20 20 2492.2 P 0.00007
AFFX-BioDn-3_at 20 20 12960.2 P 0.000147
AFFX-CreX-5_at 20 20 22603.6 P 0.000044
AFFX-CreX-3_at 20 20 33337.1 P 0.000052
AFFX-DapX-5_at 20 20 53 A 0.300606
AFFX-DapX-M_at 20 20 71.2 A 0.382599
AFFX-DapX-3_at 20 20 16.5 A 0.921998
AFFX-LysX-5_at 20 20 9.2 A 0.749204
AFFX-LysX-M_at 20 20 31.5 A 0.686277
AFFX-LysX-3_at 20 20 79.8 A 0.313723
AFFX-PheX-5_at 20 20 6.7 A 0.963431
AFFX-PheX-M_at 20 20 15.9 A 0.883887
AFFX-PheX-3_at 20 20 113.1 A 0.58862
AFFX-ThrX-5_at 20 20 105 A 0.617401
AFFX-ThrX-M_at 20 20 21.1 A 0.659339

Total number of rows: 22645

Table truncated, full table size 725 Kbytes.




Supplementary file Size Download File type/resource
GSM103778.CEL.gz 3.3 Mb (ftp)(http) CEL

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