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Sample GSM10390

Query DataSets for GSM10390

Status

Public on Sep 24, 2003

Title

mpkCCD, control

Sample type

SAGE

Anchor

Sau3A

Tag Count

39043

Tag Length

Source name

mpkCCDcl4

Organism

Mus musculus

Extracted molecule

total RNA

Description

mpkCCD stands for Murine Principal Kidney Cortical Collecting Duct. mpkCCD consists of a clonal cell line that displays some of the properties of native principal collecting duct cells, e.g. responsiveness to aldosterone and vasopressin. The current transcriptome corresponds to mpkCCD cells cultured under control conditions. Data are provided after removal of tags derived from linkers sequences.
Keywords = cortical collecting duct
Keywords = kidney
Keywords = SADE

Submission date

Sep 22, 2003

Last update date

Nov 19, 2008

Contact name

Jean-Marc Elalouf

E-mail(s)

[email protected]

Phone

(33) 1 69088022

Fax

(33) 1 69084712

Organization name

CEA Saclay

Department

IBITEC-S

Lab

Laboratoire de PhysioGénomique

Street address

City

91191 Gif/ Yvette Cedex

ZIP/Postal code

91191

Country

France

Platform ID

GPL275

Series (1)

GSE678

Transcriptome of a mouse kidney cortical collecting duct cell line: effects of aldosterone and vasopressin

Data table header descriptions
TAG	Tag sequence
COUNT	Tag abundance
TPM	tags per million

Data table
TAG	COUNT	TPM
TGCTTCAATA	502	12857.62
ATGCTAGTCT	455	11653.82
ATAATCAGCC	444	11372.08
AACTTATACA	238	6095.84
AATGCCCTCA	224	5737.26
TGCAACTGTT	208	5327.46
AAACAACCCA	180	4610.30
TGTGCAGGGT	154	3944.37
AGTCTTTAAA	149	3816.31
AACAAATCTC	142	3637.02
GGTGCCACCC	135	3457.73
AGACAAGGCA	131	3355.27
GAGAGGGCAA	128	3278.44
TTTGCTGGTA	127	3252.82
CTGATGCCCA	126	3227.21
GGGGTTTACC	123	3150.37
GCTGGACAGG	120	3073.53
AATGATGAGG	117	2996.70
TGCATATGGA	111	2843.02
AGGCTACTAC	109	2791.79

Total number of rows: 16154

Table truncated, full table size 301 Kbytes.

Supplementary data files not provided