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Sample GSM1068350 Query DataSets for GSM1068350
Status Public on May 01, 2013
Title ob_16 weeks_fasted_rep_2 [muscle]
Sample type RNA
 
Source name muscle
Organism Mus musculus
Characteristics age: 16 weeks
fasting status: fasted
strain: B6.V-Lep ob/J
diet: D12450B
tissue: muscle
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina labeling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Sample name: 05M
Data processing The data were quantile normalised using lumi library in R
 
Submission date Jan 23, 2013
Last update date May 01, 2013
Contact name Krzysztof Goryca
Organization name Uniwersytet Warszawski
Department CeNT
Street address Banacha 2c
City Warszawa
ZIP/Postal code 02-097
Country Poland
 
Platform ID GPL6885
Series (1)
GSE43691 Hepatic molecular alterations more than muscle's differentiate obese hyperphagic mice from those prolonged fed with the high-fat diet

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 5953.5375 0
ILMN_2721178 1365.433333 0
ILMN_3033922 955.24375 0
ILMN_3092673 3249.985417 0
ILMN_2816356 110.2677083 0.00501
ILMN_2808939 104.1114583 0.00877
ILMN_2634564 621.3895833 0
ILMN_2737647 66.35729167 0.198
ILMN_2734484 879.35625 0
ILMN_2952292 120.2510417 0.00125
ILMN_2699078 50.75625 0.88471
ILMN_1213681 473.2479167 0
ILMN_2735413 62.93229167 0.29825
ILMN_2735415 84.08333333 0.03258
ILMN_2891688 1127.391667 0
ILMN_2637698 582.5333333 0
ILMN_2674228 303.1260417 0
ILMN_2601546 76.19791667 0.07018
ILMN_1230831 65.99791667 0.20551
ILMN_2848071 70.18541667 0.12281

Total number of rows: 25697

Table truncated, full table size 753 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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