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Sample GSM1068370 Query DataSets for GSM1068370
Status Public on May 01, 2013
Title ob_48 weeks_non-fasted_rep_1 [muscle]
Sample type RNA
 
Source name muscle
Organism Mus musculus
Characteristics age: 48 weeks
fasting status: non-fasted
strain: B6.V-Lep ob/J
diet: D12450B
tissue: muscle
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina labeling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Sample name: 25M
Data processing The data were quantile normalised using lumi library in R
 
Submission date Jan 23, 2013
Last update date May 01, 2013
Contact name Krzysztof Goryca
Organization name Uniwersytet Warszawski
Department CeNT
Street address Banacha 2c
City Warszawa
ZIP/Postal code 02-097
Country Poland
 
Platform ID GPL6885
Series (1)
GSE43691 Hepatic molecular alterations more than muscle's differentiate obese hyperphagic mice from those prolonged fed with the high-fat diet

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 5534.983333 0
ILMN_2721178 1201.80625 0
ILMN_3033922 889.2916667 0
ILMN_3092673 3064.585417 0
ILMN_2816356 95.84375 0.00752
ILMN_2808939 193.7645833 0
ILMN_2634564 574.5208333 0
ILMN_2737647 70.43125 0.10025
ILMN_2734484 975.2208333 0
ILMN_2952292 96.5125 0.00627
ILMN_2699078 54.64583333 0.6604
ILMN_1213681 515.5041667 0
ILMN_2735413 72.65833333 0.08271
ILMN_2735415 79.12604167 0.03509
ILMN_2891688 1034.002083 0
ILMN_2637698 581.29375 0
ILMN_2674228 289.1197917 0
ILMN_2601546 76.15 0.05013
ILMN_1230831 57.87083333 0.46867
ILMN_2848071 65.2 0.18045

Total number of rows: 25697

Table truncated, full table size 748 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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