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Sample GSM1079580 Query DataSets for GSM1079580
Status Public on Jul 08, 2013
Title White Cold rep2
Sample type RNA
 
Source name Mouse white adipose tissue
Organism Mus musculus
Characteristics treatment: 22 C, 48 hours + 8 C, 24 hours
tissue: White Adipose
strain: C57BL/6
Sex: Female
Treatment protocol Warm group treated at 22 C for 72 hours. Cold group treated at 22 C for 48 hours then 8 C for 24 hours.
Growth protocol Mice were housed individually in cages measuring 48x14x13 cm, 16 hour light 8 hour dark cycle, access to to beeding material, standard mouse chow diet.
Extracted molecule total RNA
Extraction protocol RNA was extracted using Tri Reagent (Sigma)
Label Biotin
Label protocol RNA samples were labeled and amplified using the Illumina RNA amplification kit as per mnufacturer's instructions
 
Hybridization protocol Standard Illumina hybridisation protocol
Scan protocol Standard Illumina scanning protocol
Description 15
Data processing All data was processed using Genespring GX ver 10 (Agilent Technologies)
 
Submission date Feb 07, 2013
Last update date Jul 08, 2013
Contact name Neil Graham
E-mail(s) [email protected]
Phone 01159516373
Organization name University of Nottingham
Department Plant and Crop Sciences
Lab Broadley
Street address Sutton Bonington Campus
City Loughborough
State/province Leicestershire
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL10242
Series (1)
GSE44138 Cold-induced changes in gene expression in brown adipose tissue, white adipose tissue and liver

Data table header descriptions
ID_REF
VALUE quantile normalised, individual probe expression normalised to the median of the probe's expression across all samples
Detection Pval

Data table
ID_REF VALUE Detection Pval
43709 -0.9182044 0.70243
35414 0 0.47411
41174 -0.38920617 0.93512
4479 -0.2762705 0.8403
30715 -0.1782713 1
17785 0 0.21834
22201 0 0.70742
45287 -4.111626 1
18073 0 0.61011
20495 0.09463513 0.94885
41401 -1.259161 0.96132
37569 0.66218233 0.99563
27062 0 0.2776
35271 0 0.75733
33774 4.5983486 1
31763 0.37851167 0.85839
30975 -0.70737565 0.87586
18606 -0.7731681 1
33129 -0.42428708 0.95134
44774 0.46203542 1

Total number of rows: 46643

Table truncated, full table size 862 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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