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Sample GSM1083 Query DataSets for GSM1083
Status Public on Feb 12, 2002
Title 100 microM BCS 60 min
Sample type RNA
 
Channel 1
Source name CM66J low Cu++
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name CM66J 100 microM BCS 60 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Transcription
Keywords = Cell-cycle factors
Lot batch = f79cup
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL65
Series (1)
GSE26 Copper regulon in S. cerevisiae

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 86 84 1084 2352 2263 287 89 69 1768 1837 -.3 -100 .69 79 68 .479 .613 2.088 1.631 -.19 1051 202 28 44 77 93 .706
2 95 86 19 126 35 312 91 71 27 98 .11 0 .507 1.03 24 25 .543 .704 1.842 1.421 .24 961 208 28 44 92 108 .507
3 97 87 231 374 276 110 98 76 216 292 .38 0 -.097 .88 65 64 .837 1.069 1.195 .935 .58 990 208 28 44 113 129 -.097
4 96 87 38 152 54 109 98 76 42 118 .15 0 .144 .9 38 41 .704 .905 1.421 1.105 .22 865 208 28 44 130 146 .144
5 98 86 236 328 232 117 96 75 181 256 .44 0 -.383 .71 65 64 1.017 1.304 .983 .767 .53 821 336 26 47 146 167 -.383
6 87 81 16 110 22 104 88 68 17 85 .09 0 .087 .63 20 13 .727 .941 1.375 1.063 .24 861 208 28 44 165 181 .087
7 85 81 -5 76 -9 100 85 66 -7 59 .05 0 .58 7 0 0 .05 938 208 28 44 183 199
8 83 82 -2 84 -5 94 89 69 -4 65 .02 0 .34 8 2 0 .02 911 208 28 44 200 216
9 86 83 3 94 5 106 89 69 4 73 -.07 0 .415 .84 12 5 .6 .75 1.667 1.333 -.07 932 208 28 44 217 233 .415
10 83 80 1 80 -5 107 85 66 -4 62 .02 0 .57 7 4 0 .02 933 208 28 44 235 251
11 84 80 -2 78 -4 104 82 64 -4 60 .02 0 .48 8 2 0 .02 919 208 28 44 252 268
12 83 79 6 83 102 83 64 64 .1 0 .74 13 8 0 .13 950 208 28 44 269 285
13 82 79 4 77 -3 90 80 62 -2 60 -.04 0 .59 12 1 0 -.03 949 208 28 44 287 303
14 77 75 71 -2 76 73 57 -2 55 0 0 .41 11 4 0 0 947 208 28 44 304 320
15 75 74 1 75 3 73 72 56 2 58 .01 0 1 .65 12 7 .333 .5 3 2 .01 941 208 28 44 322 338 1
16 74 72 1 71 74 71 55 55 -.08 0 .45 11 7 0 -.08 928 208 28 44 339 355
17 73 70 2 63 -3 71 66 51 -2 49 -.12 0 .62 11 2 0 -.11 955 208 28 44 356 372
18 256 68 2 63 1 637 62 48 1 49 -.02 0 -1 .87 12 7 2 2 .5 .5 -.02 957 208 28 44 374 390 -1
19 263 69 14 59 2 655 57 44 2 46 .6 0 -2.807 .43 17 10 7 7 .143 .143 .25 927 208 28 44 391 407 -2.807
20 78 66 3 57 -1 149 58 45 -1 44 .07 0 .83 15 9 0 .07 945 208 28 44 408 424

Total number of rows: 8832

Table truncated, full table size 994 Kbytes.




Supplementary data files not provided
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