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Sample GSM1099133 Query DataSets for GSM1099133
Status Public on Jun 20, 2013
Title cardiomyocyte TGF-beta2 treated rep2
Sample type RNA
 
Source name cardiomyocyte TGF-beta2 treated
Organism Mus musculus
Characteristics cell line: HL-1
treatment: TGF-beta2
Treatment protocol Treated with or without growth factor (10ng/mL TGF-beta2 and 100ng/mL PDGF BB, Invitrogen), incubated in serumfree media for 23h before collection of media.
Growth protocol HL-1 cells growth in T75 flasks and keept according to protocol (serum was ultrcentrifuged before use.
Extracted molecule total RNA
Extraction protocol RNA was purified with Rneasy Fibrous Tissue Kit (Qiagen)
Label Cy3
Label protocol Illumina TotalPrep RNA Amplification Kit was used
 
Hybridization protocol Performed according to Illumina protocol
Scan protocol Illumina Beadstation 500GX according to Illumina protocol
Description 9253005037_F
Data processing Cubic spline normalization, subtracted background.
Illumina Genomestudio was used
 
Submission date Mar 15, 2013
Last update date Jun 20, 2013
Contact name Nina Gennebäck
E-mail(s) [email protected]
Organization name Umeå University
Department Public health and clinical medicin/medicin
Street address NUS 6M
City Umeå
ZIP/Postal code 901 86
Country Sweden
 
Platform ID GPL6885
Series (1)
GSE45207 Growth factor stimulation of cardiomyocytes induces changes in the transcriptional contents of secreted exosomes

Data table header descriptions
ID_REF
VALUE Cubic spline normalization, subtracted background.
9253005037_F.Avg_NBEADS
9253005037_F.BEAD_STDERR
9253005037_F.Detection Pval

Data table
ID_REF VALUE 9253005037_F.Avg_NBEADS 9253005037_F.BEAD_STDERR 9253005037_F.Detection Pval
ILMN_2896528 6461.804 48 205.5448 0
ILMN_2721178 1845.723 37 59.32825 0
ILMN_3033922 1126.82 50 58.40858 0
ILMN_3092673 5185.674 45 167.7176 0
ILMN_2816356 24.56645 21 14.18603 0.09774436
ILMN_2808939 1063.375 34 62.26204 0
ILMN_2634564 518.0854 30 39.66791 0
ILMN_2737647 -3.007902 39 8.571583 0.5488722
ILMN_2734484 1009.939 38 46.99862 0
ILMN_2952292 122.157 48 12.63624 0
ILMN_2699078 -8.740131 32 7.408257 0.7243108
ILMN_1213681 524.5576 38 33.05489 0
ILMN_2735413 -18.08577 44 6.095601 0.9373434
ILMN_2735415 11.63482 31 10.98147 0.2280702
ILMN_2891688 1559.607 38 75.21563 0
ILMN_2637698 957.4832 32 61.72319 0
ILMN_2674228 318.9259 40 27.90887 0
ILMN_2601546 4.440018 32 10.75802 0.3483709
ILMN_1230831 -12.90498 23 11.45324 0.8170426
ILMN_2848071 -9.495892 29 7.821117 0.7431078

Total number of rows: 25697

Table truncated, full table size 1039 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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