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GEO accession:
Sample GSM1105666
Query DataSets for GSM1105666
Status
Public on Jul 09, 2013
Title
primary DLBCL sample 073 (part a)
Sample type
RNA
Source name
morphological DLBCL
Organism
Homo sapiens
Characteristics
sample type: primary DLBCL
subtype: ABC
Treatment protocol
fresh frozen tumor samples
Growth protocol
tumor sample biopsy
Extracted molecule
total RNA
Extraction protocol
total RNA was extracted by RNeasy Mini Kit (Quiagen) according to manufacturers protocol
Label
biotin
Label protocol
Affymetrix Labeling Protocol (Proprietary protocol information available at
http://www.affymetrix.com/estore/browse/products.jsp?productId=prod110002&categoryId=35699#1_1
)
Hybridization protocol
Affymetrix Hybridization Protocol (Proprietary protocol information available at
http://www.affymetrix.com/estore/browse/products.jsp?productId=131467&categoryId=35807#1_1
)
Scan protocol
Affymetrix Scan Protocol (Proprietary protocol information available at
http://www.affymetrix.com/Auth/support/downloads/manuals/wash_stain_scan_cartridge_arrays_manual.pdf
)
Description
primary DLBCL sample
Data processing
Raw CEL data were RMA background corrected and then quantile-normalized. Probes were aggregated to Entrez Gene probesets as defined by the custom CDF [1] as described in [2] via median polish. [1]
http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/14.1.0/entrezg.download/HuEx10stv2_Hs_ENTREZG_14.1.0.zip
[2]M. Dai, F. Meng et al. (2005) Evolving Gene/Transcript Definitions Significantly Alter the Interpretation of GeneChip Data. Nucleic Acid Research 33 (20), e175.
Submission date
Mar 26, 2013
Last update date
Jul 11, 2013
Contact name
Michael Grau
Organization name
University of Münster
Department
Faculty of Medicine
Lab
Translational Oncology
Street address
Albert-Schweitzer-Campus 1
City
Münster
State/province
Nordrhein-Westfalen
ZIP/Postal code
48149
Country
Germany
Platform ID
GPL16869
Series (1)
GSE45495
PTEN loss defines a PI3K/AKT pathway-dependent germinal center subtype of diffuse large B-cell lymphoma
Data table header descriptions
ID_REF
VALUE
log2 transformed expression intensities of aggregated Entrez Gene probesets
Data table
ID_REF
VALUE
1_at
6.692049503
10_at
4.00605917
100_at
8.158844948
1000_at
5.664085865
10000_at
5.968681812
100009613_at
5.467784882
100009676_at
6.900517941
10001_at
6.502547741
10002_at
5.352499008
10003_at
4.096480846
100033423_at
6.106202126
100033424_at
3.017376184
100033425_at
4.087648392
100033426_at
10.43296146
100033436_at
2.322106838
100033444_at
3.439378738
100033453_at
2.350733757
100033806_at
3.536354065
100033820_at
4.424785137
100037417_at
6.510682106
Total number of rows:
22994
Table truncated, full table size
476 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM1105666_DLBCL_073.CEL.gz
22.1 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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