|
| Status |
Public on May 31, 2006 |
| Title |
A X146B39 |
| Sample type |
RNA |
| |
|
| Source name |
Breast Tumor
|
| Organism |
Homo sapiens |
| Characteristics |
INDEX (ID): X146B39
Elston (NGS) histologic grade: 3
Genetic grade signature status prediction (by SWS classifier): 3-like
Probability 1-like (by SWS classifier): 0.000672947510094213
Probability 3-like (by SWS classifier): 0.999327052489906
DFS TIME (yrs): 0.66666667
DFS EVENT (0=censored; 1=event defined as any type of recurrence (local, regional or distant) or death from breast cancer: 0
All patients (1=included in survival analysis): 1
ER+, endocrine therapy only (1=included in survival analysis):
No systemic therapy (1=included in survival analysis):
ER status: ER-
Lymph node status: LN+
p53 seq mut status (p53+=mutant; p53-=wildtype): p53+
age at diagnosis: 34
tumor size (mm): 50
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen RNeasy Mini Kit
|
| Label |
biotin
|
| Label protocol |
Approximately 10ug of total RNA was processed to produce biotynylated cRNA targets
|
| |
|
| Hybridization protocol |
Standard Affymetrix procedure
|
| Scan protocol |
Standard Affymetrix procedure
|
| Description |
Series of 249 tumours
|
| Data processing |
Affymetrix Microarray Suite Version 5.0
|
| |
|
| Submission date |
May 25, 2006 |
| Last update date |
May 31, 2006 |
| Contact name |
Lance David Miller |
| E-mail(s) |
[email protected]
|
| Phone |
65 6478 8100
|
| Fax |
65 6478 9060
|
| URL |
http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
|
| Organization name |
Genome Institute of Singapore
|
| Department |
Microarray and Expression Genomics
|
| Street address |
60 Bioplois Street, #02-01 Genome
|
| City |
Singapore |
| ZIP/Postal code |
138672 |
| Country |
Singapore |
| |
|
| Platform ID |
GPL96 |
| Series (1) |
| GSE4922 |
Genetic Reclassification of Histologic Grade Delineates New Clinical Subtypes of Breast Cancer |
|
