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Sample GSM112949 Query DataSets for GSM112949
Status Public on Nov 03, 2006
Title mating responsive genes 9
Sample type RNA
 
Source name female lower reproductive tract
Organism Drosophila melanogaster
Characteristics Females from this sample were mated then dissected immediately following mating.
Treatment protocol Females were all same aged (3 days old) and either mated or not. Mated females were dissected at the following timeepoints: 0, 3, 6, 24 hrs postmating. Unmated (control) females were dissected at times interspersed with dissections of mated females.
Growth protocol 12 hr light/dark cycle 23C + or - 2C holding and culturing regimes
Extracted molecule total RNA
Extraction protocol TRIzol - chloroform
Label Biotin (Enzo RNA transcript Labeling Kit)
 
Description Three-day-old mated and unmated females were dissected to remove the lower reproductive tract (upper uterus, sperm-storage organs, and accessory glands). Mated females were dissected either immediately following mating (0 hr) or at 3, 6, or 24 hrs following the termination of mating. Tracts of 12-40 females of like category were pooled and total RNA extracted via a TRIzol-based protocol. Processing and labeling of transcript was performed by the Molecular Biology Core Facility at the Medical College of Georgia. Arrays from mated females at the different timepoints were compared to unmated females. This sample is also known as "463.21.cel" and "0hrUGA21.CEL". keywords: reproduction, reproductive tract, accessory gland proteins, sperm
Data processing RMA (Irizarry 2003), probe-based linear model (Chu et al 2002)
 
Submission date Jun 06, 2006
Last update date Nov 03, 2006
Contact name Paul Mack
E-mail(s) [email protected]
Phone 706 542-1578
Fax 706 542-3910
Organization name University of Georgia
Department Genetics
Lab Bender
Street address 1057 Green St.
City Athens
State/province GA
ZIP/Postal code 30602-7223
Country USA
 
Platform ID GPL72
Series (1)
GSE5012 mating response genes

Data table header descriptions
ID_REF
VALUE raw signal - measure of transcript abundance utilizing input from entire probeset for each gene
ABS_CALL Statistical estimation of presence (P), absence (A), or marginal (M) based on entire probeset input
DETECTION P-VALUE p-value indicating significance level of the detection call (note that p-values for "A" calls are > 0.06, "M" calls in range 0.04 - 0.06)

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 25.1 A 0.41138
AFFX-MurIL10_at 24.2 A 0.631562
AFFX-MurIL4_at 12.9 A 0.712257
AFFX-MurFAS_at 7.2 A 0.852061
AFFX-BioB-5_at 511.3 P 0.001796
AFFX-BioB-M_at 697.8 P 0.00039
AFFX-BioB-3_at 302.5 P 0.002023
AFFX-BioC-5_at 1211.7 P 0.00039
AFFX-BioC-3_at 625.5 P 0.000044
AFFX-BioDn-5_at 893.6 P 0.000044
AFFX-BioDn-3_at 5650.3 P 0.000081
AFFX-CreX-5_at 9482.7 P 0.000044
AFFX-CreX-3_at 16346.7 P 0.000044
AFFX-DapX-5_at 3.1 A 0.559354
AFFX-DapX-M_at 37.4 A 0.39692
AFFX-DapX-3_at 7 A 0.910522
AFFX-LysX-5_at 2 A 0.945787
AFFX-LysX-M_at 12.9 A 0.772364
AFFX-LysX-3_at 33.9 A 0.354453
AFFX-PheX-5_at 3.5 A 0.937071

Total number of rows: 14010

Table truncated, full table size 355 Kbytes.




Supplementary data files not provided

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