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Sample GSM1131471 Query DataSets for GSM1131471
Status Public on May 15, 2014
Title wholeblood_woman_T-021
Sample type RNA
 
Source name did not deliver within 48 hr of hospital admission
Organism Homo sapiens
Characteristics preterm delivery within 48 hours: No
tissue: whole blood, maternal peripheral
Extracted molecule total RNA
Extraction protocol Peripheral maternal blood collected using PAXgene tubes
PAXgene Blood RNA system kit was used to isolate total RNA
Label biotin
Label protocol Labeling was performed according to standard Affymetrix protocols (Affymetrix one-cycle kit with PNAs; Affymetrix IVT kit)
 
Hybridization protocol Hybridization was performed according to standard protocols for Affymetrix U133 plus 2.0 arrays (EukGE-WS2v5)
Scan protocol Affymetrix GeneChip Scanner 2000
Data processing Data were normalised using GCRMA (v.2.30.0) and differential expression was determined using Limma with multiple hypothesis testing (Benjamini and Hochberg); Bioconductor (v.1.8.3 )/R
 
Submission date Apr 30, 2013
Last update date May 15, 2014
Contact name Jan Heng
Organization name Lunenfeld-Tanenbaum Research Institute
Street address 25 Orde Street
City Toronto
State/province ON
ZIP/Postal code M5T3H7
Country Canada
 
Platform ID GPL16311
Series (1)
GSE46510 Whole blood gene expression profile associated with spontaneous preterm birth

Data table header descriptions
ID_REF
VALUE Log2 GCRMA signal

Data table
ID_REF VALUE
57573_at 2.207162463
8563_at 9.739335891
8434_at 4.560633554
10309_at 2.207162463
100507487_at 2.207162463
80176_at 2.360106772
386678_at 3.667959146
1387_at 6.840497531
55854_at 9.798296473
150275_at 5.569547423
79572_at 3.293590792
2634_at 12.23499384
1785_at 7.504254353
8419_at 2.207162463
83548_at 2.613885832
440556_at 2.207162463
9363_at 6.191435788
51599_at 4.18058967
284661_at 2.207162463
152926_at 8.292509931

Total number of rows: 19008

Table truncated, full table size 389 Kbytes.




Supplementary file Size Download File type/resource
GSM1131471_U133Plus2_112505_XW_SL05B.CEL.gz 4.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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