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| Status |
Public on Nov 27, 2006 |
| Title |
Yeast gcr1 null mutant in galactose rep4 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
yeast, 3% galactose
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
wild type strain, S288C background, grown to early/mid log in YEP containing indicated carbon source
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
yeast, 3% galactose
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
gcr1 null mutant, S288C background, grown to early/mid log in YEP containing indicated carbon source
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| |
| Description |
labeling done with Agilent's Low RNA Input Linear Amp kit; hyb and slide processing done according to Agilent's instructions
|
| Data processing |
log2 ratio after ratio-based and LOWESS normalization in Acuity 4.0
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| |
|
| Submission date |
Jun 08, 2006 |
| Last update date |
Nov 27, 2006 |
| Contact name |
Kellie Barbara |
| E-mail(s) |
[email protected]
|
| Organization name |
Univ. of Southern MS
|
| Department |
Biological Sciences
|
| Lab |
Santangelo Lab
|
| Street address |
118 College Dr. #5018
|
| City |
Hattiesburg |
| State/province |
MS |
| ZIP/Postal code |
39406 |
| Country |
USA |
| |
|
| Platform ID |
GPL2883 |
| Series (1) |
| GSE5027 |
Transcriptome response to gcr1 deletion in raffinose, galactose, and glucose |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
-[INV_VALUE] |
| F635 Mean - B635 |
channel 1 mean minus background |
| F532 Mean - B532 |
channel 2 mean minus background |
| INV_VALUE |
ratio-based and LOWESS normalized log2 ratio |
| Data table |
| ID_REF |
VALUE |
F635 Mean - B635 |
F532 Mean - B532 |
INV_VALUE |
| 1 |
9.155 |
6 |
5158 |
-9.155 |
| 2 |
1.238 |
4 |
19 |
-1.238 |
| 3 |
-0.734 |
251 |
261 |
0.734 |
| 4 |
-0.204 |
94 |
130 |
0.204 |
| 5 |
0.005 |
159 |
256 |
-0.005 |
| 6 |
0.823 |
6 |
17 |
-0.823 |
| 7 |
-0.309 |
95 |
124 |
0.309 |
| 8 |
0.975 |
10 |
31 |
-0.975 |
| 9 |
-0.494 |
132 |
164 |
0.494 |
| 10 |
-0.815 |
376 |
368 |
0.815 |
| 11 |
-0.027 |
159 |
271 |
0.027 |
| 12 |
-0.222 |
369 |
541 |
0.222 |
| 13 |
0.278 |
19 |
36 |
-0.278 |
| 14 |
0.12 |
2257 |
4238 |
-0.12 |
| 15 |
1.653 |
3 |
16 |
-1.653 |
| 16 |
-0.271 |
340 |
484 |
0.271 |
| 17 |
-1.695 |
40 |
21 |
1.695 |
| 18 |
-0.85 |
888 |
852 |
0.85 |
| 19 |
-1.976 |
772 |
335 |
1.976 |
| 20 |
1.408 |
4 |
17 |
-1.408 |
Total number of rows: 10807
Table truncated, full table size 262 Kbytes.
| Supplementary data files not provided |
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