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| Status |
Public on Nov 27, 2006 |
| Title |
Yeast gcr1 null mutant in glucose rep2 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
yeast, 2% glucose
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
gcr1 null mutant, S288C background, grown to early/mid log in YEP containing indicated carbon source
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
yeast, 2% glucose
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
wild type strain, S288C background, grown to early/mid log in YEP containing indicated carbon source
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| |
| Description |
labeling done with Agilent's Low RNA Input Linear Amp kit; hyb and slide processing done according to Agilent's instructions
|
| Data processing |
log2 ratio after ratio-based and LOWESS normalization in Acuity 4.0
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| |
|
| Submission date |
Jun 08, 2006 |
| Last update date |
Nov 27, 2006 |
| Contact name |
Kellie Barbara |
| E-mail(s) |
[email protected]
|
| Organization name |
Univ. of Southern MS
|
| Department |
Biological Sciences
|
| Lab |
Santangelo Lab
|
| Street address |
118 College Dr. #5018
|
| City |
Hattiesburg |
| State/province |
MS |
| ZIP/Postal code |
39406 |
| Country |
USA |
| |
|
| Platform ID |
GPL2883 |
| Series (1) |
| GSE5027 |
Transcriptome response to gcr1 deletion in raffinose, galactose, and glucose |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
ratio-based and LOWESS normalized log2 ratio |
| F635 Mean - B635 |
channel 1 mean minus background |
| F532 Mean - B532 |
channel 2 mean minus background |
| Data table |
| ID_REF |
VALUE |
F635 Mean - B635 |
F532 Mean - B532 |
| 1 |
-7.257 |
32 |
1836 |
| 2 |
-0.905 |
14 |
14 |
| 3 |
0.815 |
203 |
104 |
| 4 |
0.347 |
87 |
59 |
| 5 |
-0.96 |
168 |
267 |
| 6 |
-1.168 |
10 |
12 |
| 7 |
1.218 |
207 |
75 |
| 8 |
1.002 |
65 |
31 |
| 9 |
-0.88 |
61 |
98 |
| 10 |
-1.088 |
402 |
710 |
| 11 |
1.195 |
182 |
70 |
| 12 |
-0.52 |
430 |
493 |
| 13 |
0.002 |
28 |
23 |
| 14 |
0.21 |
3590 |
2481 |
| 15 |
-0.32 |
13 |
11 |
| 16 |
0.723 |
359 |
185 |
| 17 |
-0.32 |
17 |
15 |
| 18 |
-0.989 |
471 |
775 |
| 19 |
-2.435 |
275 |
1218 |
| 20 |
-0.168 |
25 |
27 |
Total number of rows: 10807
Table truncated, full table size 194 Kbytes.
| Supplementary data files not provided |
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