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Sample GSM114053 Query DataSets for GSM114053
Status Public on Nov 21, 2006
Title large airways, smoker 010205R, MAS5
Sample type RNA
 
Source name airway epithelial cells obtained by bronchoscopy and brushing
Organism Homo sapiens
Characteristics Age: 41
Sex: M
Ethnic group: black
Smoking Status: smoker, 12 pack-years
Lung: right
Extracted molecule total RNA
Extraction protocol Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA.
 
Hybridization protocol Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HuGeneFL. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GeneArray 2500.
Description large airways, non-smoker 010205R, MAS5
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Jun 12, 2006
Last update date Dec 19, 2006
Contact name Yael Strulovici-Barel
E-mail(s) [email protected]
Organization name Weill Cornell Medical College
Department Department of Genetic Medicine
Lab Crystal
Street address 1300 York Avenue
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platform ID GPL80
Series (3)
GSE5056 Airway epithelium, large airways, phenotypically normal smokers vs non-smokers, MAS5 (HuGeneFL)
GSE5060 Airway epithelium, large and small airways, phenotypically normal smokers, non-smokers, early COPD and COPD
GSE10135 Cigarette Smoking Induces Overexpression of a Fat Depleting Gene AZGP1 in the Human Airway Epithelium

Data table header descriptions
ID_REF Probe set ID
VALUE MAS5-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
A28102_at 983.3 A 0.067678
AB000114_at 710.8 P 0.001796
AB000115_at 1315.1 P 0.004998
AB000220_at 6970.6 P 0.000052
AB000381_s_at 124.4 A 0.559354
AB000409_at 2444.8 P 0.000509
AB000410_s_at 237.2 A 0.804734
AB000449_at 2089.5 P 0.00007
AB000450_at 1609 P 0.00034
AB000460_at 4108.6 P 0.000297
AB000462_at 660.1 A 0.123572
AB000464_at 1605.6 P 0.006187
AB000466_at 388.4 A 0.834139
AB000467_at 381.7 A 0.852061
AB000468_at 5278 P 0.000081
AB000584_at 12577.3 P 0.000662
AB000816_s_at 260.2 A 0.455413
AB000895_at 1409.9 A 0.48511
AB000896_at 580.8 A 0.368438
AB000897_at 473.6 A 0.287743

Total number of rows: 7129

Table truncated, full table size 196 Kbytes.




Supplementary data files not provided
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