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Sample GSM1157533 Query DataSets for GSM1157533
Status Public on Aug 08, 2014
Title SEQC_ILM_CNL_F_2_L04_GTTTCG_BD0FG1ACXX
Sample type SRA
 
Source name Ambion ERCC Spike-In Control Mix 2
Organism synthetic construct
Characteristics seqc sample: F
platform: Illumina HiSeq 2000
site: CNL
library id: 2
lane: L04
barcode: GTTTCG
flowcell: BD0FG1ACXX
Extracted molecule polyA RNA
Extraction protocol Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description 92 poly-A tailed RNA sequences
Data processing Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.
Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site
 
Submission date Jun 10, 2013
Last update date May 15, 2019
Contact name Leming Shi
E-mail(s) [email protected]
Phone +86-18616827008
Organization name Fudan University
Department School of Life Sciences
Lab Center for Pharmacogenomics
Street address 2005 Songhu Road
City Shanghai
ZIP/Postal code 200438
Country China
 
Platform ID GPL15228
Series (2)
GSE47774 A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequence Quality Control consortium
GSE47792 SEQC Project
Relations
SRA SRX302866
BioSample SAMN02199929

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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