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Sample GSM11684 Query DataSets for GSM11684
Status Public on Apr 16, 2004
Title ZR-75-1, 36h, 3.0mM 5FU
Sample type RNA
 
Channel 1
Source name pooled reference mRNA from 4 harvests of ZR-75-1 cells
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name mRNA from "ZR-75-1, 36h, 3.0mM 5FU "
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description breast cancer derived cell line treated with 3.0 mM of 5-Fluorouracil for 36hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen
 
Submission date Oct 17, 2003
Last update date Jul 17, 2015
Contact name Charles M. Perou
E-mail(s) [email protected]
Organization name University of North Carolina at Chapel Hill
Department Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center
Street address 12-044 Lineberger Comprehensive Cancer Center CB# 7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7264
Country USA
 
Platform ID GPL550
Series (2)
GSE763 Cell-type specific responses to chemotherapeutics in breast cancer
GSE1647 Prediction of toxicant-specific gene expression signatures following chemotherapeutic treatment of breast cell lines

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
SPOT spot number on array
CH1_MEAN channel 1 mean intensity
CH1_SD standard deviation of channel 1 intensity
CH1_BKD_MEDIAN channel 1 background median intensity
CH1_BKD_SD standard deviation of channel 1 background median intensity
CH2_MEAN channel 2 mean intensity
CH2_SD standard deviation of channel 2 intensity
CH2_BKD_MEDIAN channel 2 background median intensity
CH2_BKD_SD standard deviation of channel 2 background median intensity
TOT_BPIX number of background pixels
TOT_SPIX number of spot pixels
CH2BN_MEDIAN channel 2 normalized background median intensity
CH2IN_MEAN channel 2 normalized mean intensity
CH1DL_MEAN channel 1 Lowess_normalized mean intensity
CH2DL_MEAN channel 2 Lowess_normalized mean intensity
LOG_RAT2N_MEAN log2_ratio of (CH2IN_MEAN - CH2BN_MEDIAN) over (CH1_MEAN - CH1_BKD_MEDIAN), CH2IN_MEAN and CH2BN_MEDIAN are global-normalized intensities
CORR correlation coefficient among pixels
FLAG Spot flag. 0:not flagged; negative:flagged as bad spots; positive:flagged as good spots
CONTROL Y: control gene; N: not control
UNF_VALUE LOG_RAT2L_MEAN; log2_ratio of CH2DL_MEAN over CH1DL_MEAN

Data table
ID_REF VALUE SPOT CH1_MEAN CH1_SD CH1_BKD_MEDIAN CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_MEDIAN CH2_BKD_SD TOT_BPIX TOT_SPIX CH2BN_MEDIAN CH2IN_MEAN CH1DL_MEAN CH2DL_MEAN LOG_RAT2N_MEAN CORR FLAG CONTROL UNF_VALUE
1 .675 1239 90 32 68 14 97 53 60 30 179 156 57 92 23 36 .678 .53 0 N .675
2 -.503 6439 133 104 63 12 109 82 56 17 156 156 53 104 73 51 -.474 .83 0 N -.503
3 1.413 11639 156 122 66 12 316 340 59 23 164 156 56 301 93 248 1.441 .81 0 N 1.413
4 .041 16839 70 17 62 13 64 21 55 20 187 156 52 61 8 9 .097 .22 0 N .041
5 -.857 1245 92 28 68 25 73 29 59 33 190 156 56 69 25 14 -.85 .46 0 N -.857
6 .527 6445 72 18 67 11 65 23 57 19 178 156 54 62 5 8 .606 .17 0 N .527
7 1.141 11645 4716 4979 65 14 11577 12220 62 21 152 156 59 11010 4928 10869 1.235 .98 0 N 1.141
8 .594 16845 1331 1331 65 13 2080 2150 54 30 171 156 51 1978 1303 1968 .606 .93 0 N .594
9 1.312 2539 67 15 63 12 66 24 55 19 183 156 52 63 4 10 1.387 .07 0 N 1.312
10 -.423 7739 79 19 60 17 72 27 57 22 185 156 54 68 20 15 -.413 .32 0 N -.423
11 .11 12939 123 57 61 12 131 67 59 27 166 156 56 125 64 69 .143 .72 0 N .11
12 .372 18139 212 156 60 11 268 245 58 22 116 156 55 255 157 203 .394 .81 0 N .372
13 .607 2545 123 72 61 20 157 119 55 20 161 156 52 149 64 98 .646 .8 0 N .607
14 .508 7745 86 31 60 13 97 53 58 21 208 156 55 92 27 38 .513 .55 0 N .508
15 .435 12945 289 141 60 11 385 226 60 23 166 156 57 366 235 317 .433 .9 0 N .435
16 .65 18145 69 17 57 10 78 33 58 19 202 156 55 74 12 19 .665 .23 0 N .65
17 -1.174 1240 4238 4886 68 15 2068 2406 62 33 200 156 59 1967 4345 1925 -1.128 .98 0 N -1.174
18 -.497 6440 72 20 63 11 63 19 56 16 151 156 53 60 9 7 -.435 .18 0 N -.497
19 -1.282 11640 20820 24886 65 16 9847 12043 58 23 177 156 55 9365 22228 9140 -1.157 .97 0 N -1.282
20 -.706 16840 138 81 62 17 107 59 57 20 221 156 54 102 79 48 -.677 .72 0 N -.706

Total number of rows: 20163

Table truncated, full table size 1694 Kbytes.




Supplementary data files not provided
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